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Report for CCDS25106.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25106.1 Public Mus musculus 11 Vtn 23 108 98 CCDS HistoryNCBI Gene:22370Re-query CCDS DB by CCDS ID:25106.1Re-query CCDS DB by GeneID:22370See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25106.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000017488.4 ENSMUSP00000017488.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000017488.4Link to Ensembl Protein Viewer:ENSMUSP00000017488.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000017488Re-query CCDS DB by Protein ID:ENSMUSP00000017488
Original member Current member NCBI NM_011707.2 NP_035837.1 Accepted alive Link to Nucleotide Sequence:NM_011707.2Link to Protein Sequence:NP_035837.1Re-query CCDS DB by Nucleotide ID:NM_011707Re-query CCDS DB by Protein ID:NP_035837Link to BLAST:NP_035837.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035837.1 478 P29788 478 100% 0 0

Chromosomal Locations for CCDS 25106.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 78499350 78499413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78499503 78499622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78499701 78500042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78500122 78500261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78500429 78500585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78500695 78500847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78501574 78501924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78502138 78502247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1437 nt):
ATGGCACCCCTGAGGCCCTTTTTCATACTAGCCCTGGTGGCATGGGTTTCTCTGGCTGACCAAGAGTCAT
GCAAGGGCCGCTGCACTCAGGGTTTCATGGCCAGCAAGAAGTGTCAGTGTGACGAGCTTTGCACTTACTA
TCAGAGCTGCTGTGCCGACTACATGGAGCAGTGCAAGCCCCAAGTAACGCGGGGGGACGTGTTCACTATG
CCAGAGGATGATTATTGGAGCTATGACTACGTGGAGGAGCCCAAGAACAATACCAACACCGGTGTGCAAC
CCGAGAACACCTCTCCACCCGGTGACCTAAATCCTCGGACGGACGGCACTCTAAAGCCGACAGCCTTCCT
AGATCCTGAGGAACAGCCAAGCACCCCAGCGCCTAAAGTGGAGCAACAGGAGGAGATCCTAAGGCCCGAC
ACCACTGATCAAGGGACCCCTGAGTTTCCAGAGGAAGAACTGTGCAGTGGAAAGCCCTTTGACGCCTTCA
CGGATCTCAAGAATGGGTCCCTCTTTGCCTTCCGAGGGCAGTACTGCTATGAGCTAGATGAGACGGCAGT
GAGGCCTGGGTACCCCAAACTTATCCAAGATGTCTGGGGCATTGAGGGCCCCATCGATGCTGCCTTCACT
CGCATCAACTGTCAGGGGAAGACCTACTTGTTCAAGGGTAGTCAGTACTGGCGCTTTGAGGATGGGGTCC
TGGACCCTGGTTATCCCCGAAACATCTCCGAAGGCTTCAGTGGCATACCAGACAATGTTGATGCAGCGTT
CGCCCTTCCTGCCCACCGTTACAGTGGCCGGGAAAGGGTCTACTTCTTCAAGGGGAAGCAGTACTGGGAG
TACGAATTTCAGCAGCAACCCAGCCAGGAGGAGTGCGAAGGCAGCTCTCTGTCAGCCGTGTTTGAGCACT
TTGCCTTGCTTCAGCGGGACAGCTGGGAGAACATTTTCGAACTCCTCTTCTGGGGCAGATCCTCTGATGG
AGCCAGAGAACCCCAATTCATCAGCCGGAACTGGCATGGTGTGCCAGGGAAAGTGGACGCTGCTATGGCC
GGCCGCATCTACGTCACTGGCTCCTTATCCCACTCTGCCCAAGCCAAAAAACAGAAGTCTAAGCGTAGAA
GCCGAAAGCGCTATCGTTCACGCCGAGGGCGTGGCCACAGACGCAGCCAGAGCTCGAACTCCCGTCGTTC
ATCACGTTCAATCTGGTTCTCTTTGTTCTCCAGCGAGGAGAGTGGGCTAGGAACCTACAACAACTATGAT
TATGATATGGACTGGCTTGTACCTGCCACCTGCGAGCCCATTCAGAGCGTCTATTTCTTCTCTGGAGACA
AATACTACCGAGTCAACCTTAGAACCCGGCGAGTGGACTCTGTGAATCCTCCCTACCCACGCTCCATTGC
TCAGTATTGGCTGGGCTGCCCGACCTCTGAGAAGTAG

Translation (478 aa):
MAPLRPFFILALVAWVSLADQESCKGRCTQGFMASKKCQCDELCTYYQSCCADYMEQCKPQVTRGDVFTM
PEDDYWSYDYVEEPKNNTNTGVQPENTSPPGDLNPRTDGTLKPTAFLDPEEQPSTPAPKVEQQEEILRPD
TTDQGTPEFPEEELCSGKPFDAFTDLKNGSLFAFRGQYCYELDETAVRPGYPKLIQDVWGIEGPIDAAFT
RINCQGKTYLFKGSQYWRFEDGVLDPGYPRNISEGFSGIPDNVDAAFALPAHRYSGRERVYFFKGKQYWE
YEFQQQPSQEECEGSSLSAVFEHFALLQRDSWENIFELLFWGRSSDGAREPQFISRNWHGVPGKVDAAMA
GRIYVTGSLSHSAQAKKQKSKRRSRKRYRSRRGRGHRRSQSSNSRRSSRSIWFSLFSSEESGLGTYNNYD
YDMDWLVPATCEPIQSVYFFSGDKYYRVNLRTRRVDSVNPPYPRSIAQYWLGCPTSEK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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