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Report for CCDS25098.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25098.1 Public Mus musculus 11 Spag5 23 108 98 CCDS HistoryNCBI Gene:54141Re-query CCDS DB by CCDS ID:25098.1Re-query CCDS DB by GeneID:54141See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25098.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045026.3 ENSMUSP00000045286.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045026.3Link to Ensembl Protein Viewer:ENSMUSP00000045286.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000045026Re-query CCDS DB by Protein ID:ENSMUSP00000045286
Original member Current member NCBI NM_017407.3 NP_059103.1 Accepted alive Link to Nucleotide Sequence:NM_017407.3Link to Protein Sequence:NP_059103.1Re-query CCDS DB by Nucleotide ID:NM_017407Re-query CCDS DB by Protein ID:NP_059103Link to BLAST:NP_059103.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_059103.1 1165 Q7TME2 1165 100% 0 0

Chromosomal Locations for CCDS 25098.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 78301660 78301710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78301895 78302020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78304046 78305040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78305143 78305320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78313115 78313189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78313348 78313440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78313513 78313647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78313820 78313939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78314164 78314256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78314343 78314456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78314705 78314798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78314961 78315108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78315188 78315290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78315509 78315642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78315900 78316041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78319467 78319578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78319986 78320072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78320332 78320452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78320561 78320672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78321043 78321123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78321262 78321417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78321498 78321572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78321686 78321766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78322128 78322199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3498 nt):
ATGTGGAGGGTGAAAACACTGAATCTCGGTTTGTCGCCTTCGCCCCAAAAGGGGAAGCCAGCTATGAGTA
CTCCTCTCCGAGAGCTTAAACTACAGCCCGAGGCCCTCGCCGATTCAGGGAAAGGTCCCTCTATGATCTC
CGCGCTGACCCCATACCTGTGCAGGCTGGAGCTGAAGGAAAGATGCAACAACTCATCTCCAGTGGATTTT
ATCAATACTGAGAACAACTTCCTTTCAGAACAGTTCAGCCATCCTTCAACGCACATAGAAGCTTGCCAGC
GTGAATCCGATCCAACTCCTGAAAGCAACTCTCTTTTCCATACTTTGGAGGAAGCAATAGAAACAGTGGA
TGACTTTGTCGTGGACCCAAGAGATGATAGTATAGTGGAGTCCATGGTTCTTCTGCCCTTTTCATTAGGG
CAGCAGCAAGACCTGATGCTCCAGGCTCACTTAGATACCACAGCAGAGAGAACTAAAAGCTCTCTAAATG
AATCTTTGGGGCTAGAAGATCTGGTGGGGAAGGAGGTGGCACCTTGTGTGGAAGACAGCCTAACAGAAAT
TGTTGCTATTAGGCCCGAGCAACCTACATTTCAGGACCCTCCGTTAGGACCCAGTGACACTGAAGATGCA
CCTGTGGACTTAGTTCCTTCTGAAAATGTCCTGAATTTCTCTCTGGCTCGTCTTTCTCCTTCAGCTGTCC
TGGCCCAGGATTTCTCTGTCGATCATGTCGATCCAGGGGAGGAAACCGTAGAGAACAGAGTCCTACAGGA
AATGGAAACGAGCTTCCCCACATTCCCTGAGGAGGCCGAATTGGGAGACCAAGCACCTGCTGCAAATGCA
GAAGCCGTCTCACCCTTGTACCTGACATCAAGTCTAGTGGAGATGGGGCCCCGGGAAGCCCCAGGCCCAA
CAGTAGAAGACGCCAGTAGGATTCCTGGCCTTGAGTCAGAGACTTGGATGTCCCCATTGGCCTGGCTAGA
AAAGGGTGTGAATACATCGGTCATGCTACAAAACCTCCGCCAGAGCTTATCCTTTTCTTCTGTGCTTCAG
GATGCTGCCGTTGGCAACACACCCCTCGCCACGTGTTCTGTGGGCACTTCCTTTACTCCTCCAGCACCAC
TGGAGGTAGGCACCAAGGACAGTACTTCAGAGACAGAGCGCCTCCTCTTGGGCTGCCGTCCTCCAGATCT
GGCTACCTTGTCCCGACACGACTTGGAAGAGAACCTGTTGAACTCTCTTGTCTTGCTGGAAGTTCTTTCC
CACCAGCTACAAGCCTGGAAGAGCCAGTTGACTGTCCCTCACCGGGAAGCTCGAGACAGTAGTACACAGA
CTGACAGCTCTCCTTGTGGGGTCACTAAGACACCTAAACATCTTCAGGACAGCAAGGAGATTAGACAGGC
TCTACTGCAAGCCAGGAATGTCATGCAATCATGGGGTCTAGTCTCTGGAGACCTGTTGTCCTTGCTTCAC
CTGTCCCTAACACACGTGCAAGAAGGCAGAGTGACAGTGAGTCAGGAGTCTCAGCGGTCAAAAACCCTGG
TTTCCTCCTGTTCTCGTGTGCTGAAGAAATTGAAGGCAAAGCTGCAGAGCCTCAAAACAGAATGTGAGGA
GGCAAGGCACAGCAAGGAAATGGCCCTTAAAGGCAAGGCTGCGGCAGAGGCAGTACTGGAGGCTTTCCGT
GCACATGCCAGCCAGCGCATCAGCCAACTGGAACAGGGTCTCACATCTATGCAGGAATTCAGAGGCCTTC
TACAGGAGGCACAGACCCAACTGATAGGGCTTCACACAGAACAAAAGGAGCTGGCTCAGCAGACAGTGAG
TCTGAGTTCTGCCTTGCAGCAGGACTGGACATCAGTCCAATTGAATTATGGAATATGGGCAGCTTTGCTG
AGTTGGTCTCGAGAACTCACCAAGAAACTCACAGCCAAGAGCCGGCAGGCCCTTCAGGAACGTGATGCTG
CAATTGAAGAAAAGAAGCAGGTTGTGAAGGAAGTGGAACAAGTCTCTGCCCATTTAGAGGACTGTAAAGG
TCAAATCGAACAACTGAAGTTGGAAAATAGTCGCCTTACTGCAGATCTCTCGGCTCAGCTGCAGATTCTG
ACTAGCACAGAGAGTCAGCTAAAGGAAGTACGGAGTCAGCATTCCCGCTGTGTCCAGGACCTGGCCGTGA
AGGATGAATTGCTGTGTCAACTTACCCAGAGCAACAAGGAGCAGGCTACTCAATGGCAAAAGGAAGAAAT
GGAACTGAAACACATACAAGCAGAACTGCTACAGCAGCAGGCTGTGTTGGCTAAGGAGGTCCAGGACCTG
AGGGAGACTGTGGAGTTTATAGATGAAGAAAGTCAAGTTGCTCACCGGGAGCTGGGCCAGATTGAGAGTC
AGTTGAAAGTCACGCTAGAGTTACTGCGGGAGCGCAGCCTGCAGTGTGAGACCCTCAGGGACACTGTGGA
CAGCCTGAGGGCTGAGCTGGCCAGCACTGAAGCAAAGCATGAGAAACAGGCCCTAGAGAAGACACACCAG
CATTCTCAAGAGCTGCGGCTACTGGCTGAGCAGCTGCAGAGTCTCACCCTCTTCTTACAGGCAAAACTCA
AGGAGAACAAGGCTGAATCAGAGATCATTCTGCCCAGCACAGGCTCTGCTCCAGCCCAGGAACACCCTCT
GTCCAATGACAGCAGCATCTCAGAACAGACCCCGACAGCAGCAGTAGATGAAGTGCCAGAACCAGCTCCT
GTGCCATTGCTTGGAAGTGTTAAGAGTGCTTTCACCCGAGTAGCCTCAATGGCTTCCTTTCAGCCTACAG
AGACCCCAGACTTGGAGAAGAGCCTGGCAGAAATGAGTACTGTGTTACAAGAGCTTAAGAGCCTGTGTTC
CCTGCTGCAAGAGTCTAAAGAGGAGGCCACTGGGGTCCTGCAGAGGGAAATCTGTGAACTACACTCGAGA
CTACAGGCCCAAGAAGAAGAGCATCAGGAAGCCCTGAAGGCAAAGGAAGCAGACATGGAGAAGCTGAACC
AGGCCTTGTGCTTGCTCCGCAAGAATGAGAAGGAGCTCCTGGAAGTGATACAGAAGCAGAACGAGAAGAT
CCTGGGGCAAATAGACAAGAGCGGCCAGCTCATAAACCTCAGAGAGGAGGTGACCCAGCTCACACAGTCA
CTTCGGCGTGCAGAGACAGAGACTAAAGTGCTCCAGGAAGCCCTGGAAGGCCAGCTAGATCCCAGCTGCC
AGCTGATGGCTACTAACTGGATCCAGGAAAAAGTGTTTCTCTCACAGGAGGTGAGCAAGCTGAGGGTTAT
GTTCCTGGAGATGAAAACTGAGAAGGAACAGCTGATGGACAAGTATCTGAGCCATAGGCACATCCTGGAG
GAGAATCTTCGGCGCTCTGACACAGAGTTAAAGAAACTCGATGACACAATTCAGCATGTCTATGAGACTC
TGTTGTCTATCCCAGAGACTATGAAGAGTTGCAAGGAGTTACAAGGATTGCTAGAATTTCTGAGCTAA

Translation (1165 aa):
MWRVKTLNLGLSPSPQKGKPAMSTPLRELKLQPEALADSGKGPSMISALTPYLCRLELKERCNNSSPVDF
INTENNFLSEQFSHPSTHIEACQRESDPTPESNSLFHTLEEAIETVDDFVVDPRDDSIVESMVLLPFSLG
QQQDLMLQAHLDTTAERTKSSLNESLGLEDLVGKEVAPCVEDSLTEIVAIRPEQPTFQDPPLGPSDTEDA
PVDLVPSENVLNFSLARLSPSAVLAQDFSVDHVDPGEETVENRVLQEMETSFPTFPEEAELGDQAPAANA
EAVSPLYLTSSLVEMGPREAPGPTVEDASRIPGLESETWMSPLAWLEKGVNTSVMLQNLRQSLSFSSVLQ
DAAVGNTPLATCSVGTSFTPPAPLEVGTKDSTSETERLLLGCRPPDLATLSRHDLEENLLNSLVLLEVLS
HQLQAWKSQLTVPHREARDSSTQTDSSPCGVTKTPKHLQDSKEIRQALLQARNVMQSWGLVSGDLLSLLH
LSLTHVQEGRVTVSQESQRSKTLVSSCSRVLKKLKAKLQSLKTECEEARHSKEMALKGKAAAEAVLEAFR
AHASQRISQLEQGLTSMQEFRGLLQEAQTQLIGLHTEQKELAQQTVSLSSALQQDWTSVQLNYGIWAALL
SWSRELTKKLTAKSRQALQERDAAIEEKKQVVKEVEQVSAHLEDCKGQIEQLKLENSRLTADLSAQLQIL
TSTESQLKEVRSQHSRCVQDLAVKDELLCQLTQSNKEQATQWQKEEMELKHIQAELLQQQAVLAKEVQDL
RETVEFIDEESQVAHRELGQIESQLKVTLELLRERSLQCETLRDTVDSLRAELASTEAKHEKQALEKTHQ
HSQELRLLAEQLQSLTLFLQAKLKENKAESEIILPSTGSAPAQEHPLSNDSSISEQTPTAAVDEVPEPAP
VPLLGSVKSAFTRVASMASFQPTETPDLEKSLAEMSTVLQELKSLCSLLQESKEEATGVLQREICELHSR
LQAQEEEHQEALKAKEADMEKLNQALCLLRKNEKELLEVIQKQNEKILGQIDKSGQLINLREEVTQLTQS
LRRAETETKVLQEALEGQLDPSCQLMATNWIQEKVFLSQEVSKLRVMFLEMKTEKEQLMDKYLSHRHILE
ENLRRSDTELKKLDDTIQHVYETLLSIPETMKSCKELQGLLEFLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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