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Report for CCDS25069.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25069.1 Public Mus musculus 11 Trarg1 23 108 98 CCDS HistoryNCBI Gene:237858Re-query CCDS DB by CCDS ID:25069.1Re-query CCDS DB by GeneID:237858See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25069.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062024.2 ENSMUSP00000061634.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062024.2Link to Ensembl Protein Viewer:ENSMUSP00000061634.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000062024Re-query CCDS DB by Protein ID:ENSMUSP00000061634
Original member Current member NCBI NM_177709.3 NP_808377.1 Accepted alive Link to Nucleotide Sequence:NM_177709.3Link to Protein Sequence:NP_808377.1Re-query CCDS DB by Nucleotide ID:NM_177709Re-query CCDS DB by Protein ID:NP_808377Link to BLAST:NP_808377.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808377.1 173 Q8C838 173 100% 0 0

Chromosomal Locations for CCDS 25069.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 76680160 76680537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76694164 76694296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76696226 76696236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (522 nt):
ATGGCCAACCCAGCGCAGCCTCCGCTTCAGGACCCAGGCTCCACCTCACCCTTGGAACTGCCTGAGATGG
AGAAACTACTCACAAAAGTGGAGAACAAGGATGACCAAGCCCTGAATCTGTCCAAGTCTCTGTCAGGGGC
TCTGGACCTGGAGCAGAATGGTCACAGCCTGCCCTTCAAGGTCATCTCCGAGGGGCACCGCCAGCCCTCC
CTTTCCGGCTCCCCTTCCCGGGTCAGCTCTCGGCGAGCATCCTCCGTCATCACCACATCCTACGCCCAGG
ACCAAGAAGCCCCCAAAGATTACCTGGTCCTTGCCATTGCCTCTTGCTTCTGCCCCGTCTGGCCCCTCAA
CCTCATCCCCCTTATCTTTTCTATCATGTCTCGAAGTAGTGTGCAGCAGGGGGACCTGGATGGGGCACGG
AGGCTGGGCCGCCTGGCACGGCTACTCAGCATCACCTTCATCATCCTGGGCATCGTTATCATCATTGTGG
CTGTCACTGTCAATTTCACAGTTCCGAAGTAA

Translation (173 aa):
MANPAQPPLQDPGSTSPLELPEMEKLLTKVENKDDQALNLSKSLSGALDLEQNGHSLPFKVISEGHRQPS
LSGSPSRVSSRRASSVITTSYAQDQEAPKDYLVLAIASCFCPVWPLNLIPLIFSIMSRSSVQQGDLDGAR
RLGRLARLLSITFIILGIVIIIVAVTVNFTVPK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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