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Report for CCDS25007.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25007.1 Public Mus musculus 11 Or1e1c 23 108 98 CCDS HistoryNCBI Gene:258924Re-query CCDS DB by CCDS ID:25007.1Re-query CCDS DB by GeneID:258924See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25007.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000120401.8 ENSMUSP00000113236.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120401.8Link to Ensembl Protein Viewer:ENSMUSP00000113236.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120401Re-query CCDS DB by Protein ID:ENSMUSP00000113236
Original member Current member EBI ENSMUST00000170592.3 ENSMUSP00000126073.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170592.3Link to Ensembl Protein Viewer:ENSMUSP00000126073.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170592Re-query CCDS DB by Protein ID:ENSMUSP00000126073
Original member Current member NCBI NM_146922.2 NP_667133.1 Accepted alive Link to Nucleotide Sequence:NM_146922.2Link to Protein Sequence:NP_667133.1Re-query CCDS DB by Nucleotide ID:NM_146922Re-query CCDS DB by Protein ID:NP_667133Link to BLAST:NP_667133.1

Chromosomal Locations for CCDS 25007.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 73374751 73375704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (954 nt):
ATGCAGGGCACCACAGAAAGGAATCAAACTGCCATCTCCCAGTTCCTCCTCCTGGGCCTGCCCATCCCCA
CAGAGCATCAACACCTGTTCTATGCCCTGTTCCTGGCCATGTACCTCACCACCGTCCTGGGGAACCTCAT
CATCATCATCCTTATTCATCTGGACTCCCATCTCCACACACCCATGTATTCTTTCCTCAGCAATTTGTCC
TTCTCTGATCTCTGCTTTTCATCTGTCACAATGCCCAAATTGCTGCAGAACATGCAGAGCCAGGATCCAT
CAATTCCCTATGCAGGCTGCCTGGCACAAATGTACTTTTTCCTGTTTTTTGCAGACCTTGAAAGCTTCCT
CCTTGTGGCCATGGCCTATGACCGCTATGTGGCTATCTGCTTCCCCCTTCATTACATGAGCATCATGAGC
CCCAGGCTCTGTGTGAGTCTGGTGCTGCTGTCCTGGGTGCTGACCACCTTCCATGCCATGCTGCATACCC
TGCTCATGGCCAGATTGTCATTCTGTGAGGACAATGTGATCCCCCACTTTTTCTGTGACATGTCTGCTCT
GCTGAAGCTGTCCTGCTCTGACACCTATGTTAATGAATTGGTGATATTTGTCATGGGAAGCCTGATCCTT
GTCATTCCATTTGTGCTCATCCTTGTGTCCTATGCACGAATTGTGTCCTCCATTCTCAAGGTCCCGTCTG
CTCGAGGCATCCGTAAAGCCTTCTCCACCTGTGGGTCCCACCTGTCTGTGGTGTCACTGTTCTATGGAAC
AGTCATTGGTCTGTACTTATGTCCATCAGCTGATAACTCTACTGTGAAGGAAACTGTCATGGCCATGATG
TACACAGTGGTGACTCCCATGCTGAACCCCTTCATCTACAGCCTGAGGAACAGAGACATGAAGGGGGCCC
TAATTAGTGTTCTTTGCAAGAAGAAAATTCTTTTCTGTCTATGA

Translation (317 aa):
MQGTTERNQTAISQFLLLGLPIPTEHQHLFYALFLAMYLTTVLGNLIIIILIHLDSHLHTPMYSFLSNLS
FSDLCFSSVTMPKLLQNMQSQDPSIPYAGCLAQMYFFLFFADLESFLLVAMAYDRYVAICFPLHYMSIMS
PRLCVSLVLLSWVLTTFHAMLHTLLMARLSFCEDNVIPHFFCDMSALLKLSCSDTYVNELVIFVMGSLIL
VIPFVLILVSYARIVSSILKVPSARGIRKAFSTCGSHLSVVSLFYGTVIGLYLCPSADNSTVKETVMAMM
YTVVTPMLNPFIYSLRNRDMKGALISVLCKKKILFCL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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