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Report for CCDS24992.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24992.1 Public Mus musculus 11 P2rx1 23 108 98 CCDS HistoryNCBI Gene:18436Re-query CCDS DB by CCDS ID:24992.1Re-query CCDS DB by GeneID:18436See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24992.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021141.13 ENSMUSP00000021141.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021141.13Link to Ensembl Protein Viewer:ENSMUSP00000021141.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000021141Re-query CCDS DB by Protein ID:ENSMUSP00000021141
Original member Current member NCBI NM_008771.3 NP_032797.3 Accepted alive Link to Nucleotide Sequence:NM_008771.3Link to Protein Sequence:NP_032797.3Re-query CCDS DB by Nucleotide ID:NM_008771Re-query CCDS DB by Protein ID:NP_032797Link to BLAST:NP_032797.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032797.3 399 P51576 399 100% 0 0

Chromosomal Locations for CCDS 24992.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 72999315 72999451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73008102 73008249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73008467 73008538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73008928 73008997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73009186 73009282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73009586 73009666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73009930 73010071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73012453 73012580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73012908 73012998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73013391 73013456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73013820 73013921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73014061 73014126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1200 nt):
ATGGCTCGGCGGCTGCAGGATGAGCTGTCAGCCTTCTTCTTTGAGTATGACACTCCCCGGATGGTGCTGG
TACGAAACAAGAAGGTGGGAGTCATTTTCCGTCTGATCCAGTTGGTGGTTCTGGTCTACGTCATTGGGTG
GGTGTTTGTCTATGAAAAAGGATACCAGACCTCAAGTGGCCTTATCAGCAGTGTGTCAGTGAAACTCAAG
GGCTTGGCTGTGACCCAGCTCCAGGGCCTGGGACCCCAGGTCTGGGACGTGGCTGACTATGTCTTCCCAG
CACATGGGGACAGCTCCTTTGTAGTTATGACCAATTTCATCATGACCCCTCAGCAGGCTCAAGGACATTG
TGCAGAGAACCCAGAAGGTGGCATATGCCAAGATGACAGTGGCTGCACTCCAGGAAAAGCAGAAAGGAAA
GCCCAAGGTATTCGCACAGGCAACTGTGTGCCCTTCAATGGCACTGTGAAGACGTGTGAGATCTTTGGCT
GGTGTCCTGTAGAGGTGGATGACAAGATCCCAAGCCCTGCTCTTCTTCATGAGGCTGAGAACTTCACCCT
CTTCATCAAAAACAGCATCAGCTTTCCACGCTTCAAGGTCAACAGGCGCAACCTGGTGGAGGAGGTGAAT
GGTACCTACATGAAGAAATGCCTCTACCACAAGATTCTACACCCGCTGTGCCCAGTCTTCAGCCTTGGCT
ATGTGGTGCGAGAGTCGGGCCAGGACTTCCGAAGCCTTGCTGAGAAGGGCGGGGTGGTTGGTATCACCAT
CGACTGGGAGTGTGACCTGGACTGGCATGTACGGCACTGCAAACCCATCTACCAGTTCCATGGACTGTAC
GGGGAGAAGAACCTGTCTCCAGGCTTCAACTTCAGATTTGCCAGGCACTTTGTGCAGAATGGGACAAACC
GTCGTCACCTCTTCAAGGTGTTTGGGATTCGCTTTGATATCCTTGTGGATGGCAAGGCTGGGAAGTTTGA
CATCATCCCTACTATGACTACCATCGGCTCTGGGATTGGCATCTTTGGAGTGGCCACAGTTCTCTGTGAT
CTCTTATTGCTCCACATCCTGCCTAAGAGGCACTACTACAAGCAGAAGAAGTTCAAGTATGCGGAGGACA
TGGGGCCTGGGGAGGGTGAACGTGACCCCGCGGCCACCAGCTCCACTCTGGGCCTGCAGGAGAACATGAG
GACCTCCTGA

Translation (399 aa):
MARRLQDELSAFFFEYDTPRMVLVRNKKVGVIFRLIQLVVLVYVIGWVFVYEKGYQTSSGLISSVSVKLK
GLAVTQLQGLGPQVWDVADYVFPAHGDSSFVVMTNFIMTPQQAQGHCAENPEGGICQDDSGCTPGKAERK
AQGIRTGNCVPFNGTVKTCEIFGWCPVEVDDKIPSPALLHEAENFTLFIKNSISFPRFKVNRRNLVEEVN
GTYMKKCLYHKILHPLCPVFSLGYVVRESGQDFRSLAEKGGVVGITIDWECDLDWHVRHCKPIYQFHGLY
GEKNLSPGFNFRFARHFVQNGTNRRHLFKVFGIRFDILVDGKAGKFDIIPTMTTIGSGIGIFGVATVLCD
LLLLHILPKRHYYKQKKFKYAEDMGPGEGERDPAATSSTLGLQENMRTS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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