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Report for CCDS2479.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2479.1 Public Homo sapiens 2 ITM2C 24 110 108 CCDS HistoryNCBI Gene:81618Re-query CCDS DB by CCDS ID:2479.1Re-query CCDS DB by GeneID:81618See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2479.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000326427.11 ENSP00000322730.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000326427.11Link to Ensembl Protein Viewer:ENSP00000322730.6Re-query CCDS DB by Nucleotide ID:ENST00000326427Re-query CCDS DB by Protein ID:ENSP00000322730
Original member Current member NCBI NM_001287241.2 NP_001274170.1 Accepted alive Link to Nucleotide Sequence:NM_001287241.2Link to Protein Sequence:NP_001274170.1Re-query CCDS DB by Nucleotide ID:NM_001287241Re-query CCDS DB by Protein ID:NP_001274170Link to BLAST:NP_001274170.1
Original member Current member NCBI NM_030926.6 NP_112188.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_030926.6Link to Protein Sequence:NP_112188.1Re-query CCDS DB by Nucleotide ID:NM_030926Re-query CCDS DB by Protein ID:NP_112188Link to BLAST:NP_112188.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001274170.1 267 Q9NQX7-1 267 100% 0 0
NP_112188.1 267 Q9NQX7-1 267 100% 0 0

Chromosomal Locations for CCDS 2479.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 230865026 230865145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 230873417 230873557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 230875620 230875808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 230876857 230876967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 230877400 230877550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 230878008 230878099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (804 nt):
ATGGTGAAGATTAGCTTCCAGCCCGCCGTGGCTGGCATCAAGGGCGACAAGGCTGACAAGGCGTCGGCGT
CGGCCCCTGCGCCGGCCTCGGCCACCGAGATCCTGCTGACGCCGGCTAGGGAGGAGCAGCCCCCACAACA
TCGATCCAAGAGGGGGGGCTCAGTGGGCGGCGTGTGCTACCTGTCGATGGGCATGGTCGTGCTGCTCATG
GGCCTCGTGTTCGCCTCTGTCTACATCTACAGATACTTCTTCCTTGCGCAGCTGGCCCGAGATAACTTCT
TCCGCTGTGGTGTGCTGTATGAGGACTCCCTGTCCTCCCAGGTCCGGACTCAGATGGAGCTGGAAGAGGA
TGTGAAAATCTACCTCGACGAGAACTACGAGCGCATCAACGTGCCTGTGCCCCAGTTTGGCGGCGGTGAC
CCTGCAGACATCATCCATGACTTCCAGCGGGGTCTGACTGCGTACCATGATATCTCCCTGGACAAGTGCT
ATGTCATCGAACTCAACACCACCATTGTGCTGCCCCCTCGCAACTTCTGGGAGCTCCTCATGAACGTGAA
GAGGGGGACCTACCTGCCGCAGACGTACATCATCCAGGAGGAGATGGTGGTCACGGAGCATGTCAGTGAC
AAGGAGGCCCTGGGGTCCTTCATCTACCACCTGTGCAACGGGAAAGACACCTACCGGCTCCGGCGCCGGG
CAACGCGGAGGCGGATCAACAAGCGTGGGGCCAAGAACTGCAATGCCATCCGCCACTTCGAGAACACCTT
CGTGGTGGAGACGCTCATCTGCGGGGTGGTGTGA

Translation (267 aa):
MVKISFQPAVAGIKGDKADKASASAPAPASATEILLTPAREEQPPQHRSKRGGSVGGVCYLSMGMVVLLM
GLVFASVYIYRYFFLAQLARDNFFRCGVLYEDSLSSQVRTQMELEEDVKIYLDENYERINVPVPQFGGGD
PADIIHDFQRGLTAYHDISLDKCYVIELNTTIVLPPRNFWELLMNVKRGTYLPQTYIIQEEMVVTEHVSD
KEALGSFIYHLCNGKDTYRLRRRATRRRINKRGAKNCNAIRHFENTFVVETLICGVV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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