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Report for CCDS2471.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2471.1 Public Homo sapiens 2 PID1 24 110 108 CCDS HistoryNCBI Gene:55022Re-query CCDS DB by CCDS ID:2471.1Re-query CCDS DB by GeneID:55022See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2471.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000392054.7 ENSP00000375907.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000392054.7Link to Ensembl Protein Viewer:ENSP00000375907.3Re-query CCDS DB by Nucleotide ID:ENST00000392054Re-query CCDS DB by Protein ID:ENSP00000375907
Original member Current member NCBI NM_017933.5 NP_060403.3 Accepted alive Link to Nucleotide Sequence:NM_017933.5Link to Protein Sequence:NP_060403.3Re-query CCDS DB by Nucleotide ID:NM_017933Re-query CCDS DB by Protein ID:NP_060403Link to BLAST:NP_060403.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060403.3 248 Q7Z2X4-2 248 100% 0 0

Chromosomal Locations for CCDS 2471.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 229025632 229026108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 229155818 229155964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 229262683 229262805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (747 nt):
ATGCCAAGGATTGCTGGCAACCACCTGATGTTAGAAGAGTCGAGGACATGTTCTTCTCCAGAGCTTTTGG
ATGGTGTGTGGCCCTGCCAACCTTTACATTTTGGACTTCCAGCCTCCGAAATGCACTTTCAGACCATGCT
GAAGTCTAAATTGAATGTCTTAACACTGAAAAAGGAACCTCTCCCAGCGGTCATCTTCCATGAGCCGGAG
GCCATTGAGCTGTGCACGACCACACCGCTGATGAAGACAAGGACTCACAGTGGCTGCAAGGTTACCTACC
TGGGCAAAGTCTCCACCACTGGCATGCAGTTTTTGTCAGGCTGCACAGAAAAGCCAGTCATTGAGCTCTG
GAAGAAGCACACGCTAGCCCGAGAGGATGTCTTTCCGGCCAATGCCCTCCTGGAAATCCGGCCATTCCAA
GTTTGGCTCCATCATCTCGACCACAAAGGGGAGGCCACAGTGCACATGGATACCTTCCAGGTGGCCCGCA
TCGCCTACTGCACCGCCGACCACAACGTGAGCCCCAACATCTTCGCCTGGGTCTACAGGGAGATCAATGA
TGACCTGTCCTACCAGATGGACTGCCACGCCGTGGAGTGCGAGAGCAAGCTCGAGGCCAAGAAACTGGCC
CACGCCATGATGGAGGCCTTCAGGAAGACTTTCCACAGTATGAAGAGCGACGGGCGGATCCACAGCAACA
GCTCCTCCGAAGAGGTTTCCCAGGAATTGGAATCCGATGATGGCTGA

Translation (248 aa):
MPRIAGNHLMLEESRTCSSPELLDGVWPCQPLHFGLPASEMHFQTMLKSKLNVLTLKKEPLPAVIFHEPE
AIELCTTTPLMKTRTHSGCKVTYLGKVSTTGMQFLSGCTEKPVIELWKKHTLAREDVFPANALLEIRPFQ
VWLHHLDHKGEATVHMDTFQVARIAYCTADHNVSPNIFAWVYREINDDLSYQMDCHAVECESKLEAKKLA
HAMMEAFRKTFHSMKSDGRIHSNSSSEEVSQELESDDG


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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