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Report for CCDS24548.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24548.1 Public Mus musculus 11 Hmmr 23 108 98 CCDS HistoryNCBI Gene:15366Re-query CCDS DB by CCDS ID:24548.1Re-query CCDS DB by GeneID:15366See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24548.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020579.8 ENSMUSP00000020579.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020579.8Link to Ensembl Protein Viewer:ENSMUSP00000020579.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000020579Re-query CCDS DB by Protein ID:ENSMUSP00000020579
Original member NCBI NM_013552.2 NP_038580.2 Updated not alive Link to Nucleotide Sequence:NM_013552.2Link to Protein Sequence:NP_038580.2Re-query CCDS DB by Nucleotide ID:NM_013552Re-query CCDS DB by Protein ID:NP_038580
Current member NCBI NM_013552.3 NP_038580.2 Accepted alive Link to Nucleotide Sequence:NM_013552.3Link to Protein Sequence:NP_038580.2Re-query CCDS DB by Nucleotide ID:NM_013552Re-query CCDS DB by Protein ID:NP_038580Link to BLAST:NP_038580.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038580.2 794 Q00547-1 794 100% 0 0

Chromosomal Locations for CCDS 24548.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 40702839 40702858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 40703782 40703935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 40705892 40706068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 40707350 40707449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 40707565 40707717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 40708015 40708161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 40709908 40710276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 40713978 40714192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 40714711 40714859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 40715241 40715416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 40715869 40715943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 40721639 40721739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 40721830 40721916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 40723398 40723586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 40724873 40724920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 40728427 40728506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 40729122 40729220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 40733314 40733359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2385 nt):
ATGTCCTTTCCTAAGGCGCCCCTGAAGAGATTCAATGACCCTTCGGGTTGTGCTCCATCTCCGGGTGCTT
ATGATGTTAAAACTTCAGAAGCAACTAAAGGACCAGTGTCTTTTCAGAAATCACAAAGATTTAAAAACCA
AAGAGAGTCTCAACAAAATCTTAACATTGACAAAGATACAACCTTGCTTGCTTCGGCTAAAAAAGCAAAG
AAGTCTGTGTCAAAGAAGGACTCTCAGAAGAATGATAAAGATGTGAAGAGATTAGAAAAAGAGATTCGCG
CTCTTTTGCAAGAGCGAGGGACTCAGGACAAACGGATCCAGGACATGGAATCTGAATTGGAGAAGACAGA
AGCAAAGCTCAATGCAGCAGTCAGAGAGAAAACATCTCTCTCTGCGAGTAATGCTTCACTGGAAAAACGG
CTTACTGAATTAACCAGAGCCAACGAGCTACTAAAGGCTAAGTTTTCTGAAGATGGTCACCAAAAGAATA
TGAGAGCTCTAAGCCTGGAATTGATGAAACTCAGAAATAAGAGAGAGACAAAGATGAGGAGTATGATGGT
CAAACAGGAAGGCATGGAGCTGAAGCTGCAGGCCACTCAGAAGGACCTCACGGAGTCTAAGGGAAAAATA
GTCCAGCTGGAGGGAAAGCTTGTTTCAATAGAGAAAGAAAAGATCGATGAAAAATGTGAAACAGAAAAAC
TCTTAGAATACATCCAAGAAATTAGCTGTGCATCTGATCAAGTGGAAAAATGCAAAGTAGATATTGCCCA
GTTAGAAGAAGATTTGAAAGAGAAGGATCGTGAGATTTTAAGTCTTAAGCAGTCTCTTGAGGAAAACATT
ACATTTTCTAAGCAAATAGAAGACCTGACTGTTAAATGCCAGCTACTTGAAACAGAAAGAGACAACCTTG
TCAGCAAGGATAGAGAAAGGGCTGAAACTCTCAGTGCTGAGATGCAGATCCTGACAGAGAGGCTGGCTCT
GGAAAGGCAAGAATATGAAAAGCTGCAACAAAAAGAATTGCAAAGCCAGTCACTTCTGCAGCAAGAGAAG
GAACTGTCTGCTCGTCTGCAGCAGCAGCTCTGCTCTTTCCAAGAGGAAATGACTTCTGAGAAGAACGTCT
TTAAAGAAGAGCTAAAGCTCGCCCTGGCTGAGTTGGATGCGGTCCAGCAGAAGGAGGAGCAGAGTGAAAG
GCTGGTTAAACAGCTGGAAGAGGAAACGAAGTCAACTGCAGAACAACTGACGCGGCTGGACAACCTGCTG
AGAGAGAAAGAAGTTGAACTGGAGAAACATATTGCTGCTCACGCCCAAGCCATCTTGATTGCACAAGAGA
AGTATAATGACACAGCACAGAGTCTGAGGGACGTCACTGCTCAGTTGGAAAGTGTGCAAGAGAAGTATAA
TGACACAGCACAGAGTCTGAGGGACGTCACTGCTCAGTTGGAAAGTGAGCAAGAGAAGTACAATGACACA
GCACAGAGTCTGAGGGACGTCACTGCTCAGTTGGAAAGTGAGCAAGAGAAGTACAATGACACAGCACAGA
GTCTGAGGGACGTCACTGCTCAGTTGGAAAGTGTGCAAGAGAAGTACAATGACACAGCACAGAGTCTGAG
GGACGTCACTGCTCAGTTGGAAAGCTATAAGTCATCAACACTTAAAGAAATAGAAGATCTTAAACTGGAG
AATTTGACTCTACAAGAAAAAGTAGCTATGGCTGAAAAAAGTGTAGAAGATGTTCAACAGCAGATATTGA
CAGCTGAGAGCACAAATCAAGAATATGCAAGGATGGTTCAAGATTTGCAGAACAGATCAACCTTAAAAGA
AGAAGAAATTAAAGAAATCACATCTTCATTTCTTGAGAAAATAACTGATTTGAAAAATCAACTCAGACAA
CAAGATGAAGACTTTAGGAAGCAGCTGGAAGAGAAAGGAAAAAGAACAGCAGAGAAAGAAAATGTAATGA
CAGAATTAACCATGGAAATTAATAAATGGCGTCTCCTATATGAAGAACTATATGAAAAAACTAAACCTTT
TCAGCAACAACTGGATGCCTTTGAAGCCGAGAAACAGGCATTGTTGAATGAACATGGTGCAACTCAGGAG
CAGCTAAATAAAATCAGAGACTCCTATGCACAGCTACTTGGTCACCAGAACCTAAAGCAAAAAATCAAAC
ATGTTGTGAAATTGAAAGATGAAAATAGCCAACTCAAATCGGAGGTGTCAAAACTCCGATCTCAGCTTGT
TAAAAGGAAACAAAATGAGCTCAGACTTCAGGGAGAATTAGATAAAGCTCTGGGCATCAGACACTTTGAC
CCTTCCAAGGCTTTTTGTCATGCATCTAAGGAGAATTTTACTCCATTAAAAGAAGGCAACCCAAACTGCT
GCTGA

Translation (794 aa):
MSFPKAPLKRFNDPSGCAPSPGAYDVKTSEATKGPVSFQKSQRFKNQRESQQNLNIDKDTTLLASAKKAK
KSVSKKDSQKNDKDVKRLEKEIRALLQERGTQDKRIQDMESELEKTEAKLNAAVREKTSLSASNASLEKR
LTELTRANELLKAKFSEDGHQKNMRALSLELMKLRNKRETKMRSMMVKQEGMELKLQATQKDLTESKGKI
VQLEGKLVSIEKEKIDEKCETEKLLEYIQEISCASDQVEKCKVDIAQLEEDLKEKDREILSLKQSLEENI
TFSKQIEDLTVKCQLLETERDNLVSKDRERAETLSAEMQILTERLALERQEYEKLQQKELQSQSLLQQEK
ELSARLQQQLCSFQEEMTSEKNVFKEELKLALAELDAVQQKEEQSERLVKQLEEETKSTAEQLTRLDNLL
REKEVELEKHIAAHAQAILIAQEKYNDTAQSLRDVTAQLESVQEKYNDTAQSLRDVTAQLESEQEKYNDT
AQSLRDVTAQLESEQEKYNDTAQSLRDVTAQLESVQEKYNDTAQSLRDVTAQLESYKSSTLKEIEDLKLE
NLTLQEKVAMAEKSVEDVQQQILTAESTNQEYARMVQDLQNRSTLKEEEIKEITSSFLEKITDLKNQLRQ
QDEDFRKQLEEKGKRTAEKENVMTELTMEINKWRLLYEELYEKTKPFQQQLDAFEAEKQALLNEHGATQE
QLNKIRDSYAQLLGHQNLKQKIKHVVKLKDENSQLKSEVSKLRSQLVKRKQNELRLQGELDKALGIRHFD
PSKAFCHASKENFTPLKEGNPNCC


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
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