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Report for CCDS24471.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24471.1 Public Mus musculus 11 B3gnt2 23 108 98 CCDS HistoryNCBI Gene:53625Re-query CCDS DB by CCDS ID:24471.1Re-query CCDS DB by GeneID:53625See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24471.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055549.3 ENSMUSP00000053528.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055549.3Link to Ensembl Protein Viewer:ENSMUSP00000053528.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000055549Re-query CCDS DB by Protein ID:ENSMUSP00000053528
Original member Current member EBI ENSMUST00000062844.10 ENSMUSP00000060247.10 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062844.10Link to Ensembl Protein Viewer:ENSMUSP00000060247.10Re-query CCDS DB by Nucleotide ID:ENSMUST00000062844Re-query CCDS DB by Protein ID:ENSMUSP00000060247
Original member Current member NCBI NM_001169114.1 NP_001162585.1 Accepted alive Link to Nucleotide Sequence:NM_001169114.1Link to Protein Sequence:NP_001162585.1Re-query CCDS DB by Nucleotide ID:NM_001169114Re-query CCDS DB by Protein ID:NP_001162585Link to BLAST:NP_001162585.1
Original member Current member NCBI NM_016888.5 NP_058584.3 Accepted alive Link to Nucleotide Sequence:NM_016888.5Link to Protein Sequence:NP_058584.3Re-query CCDS DB by Nucleotide ID:NM_016888Re-query CCDS DB by Protein ID:NP_058584Link to BLAST:NP_058584.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001162585.1 397 Q9Z222 397 100% 0 0
NP_058584.3 397 Q9Z222 397 100% 0 0

Chromosomal Locations for CCDS 24471.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 22835993 22837186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1194 nt):
ATGAGTGTGGGGCGTCGAAGAGTCAAGTTGCTGGGCATCCTGATGATGGCAAATGTCTTCATTTATTTGA
TTGTGGAAGTCTCCAAAAACAGTAGCCAAGACAAAAATGGAAAGGGAGGAGTAATAATCCCGAAAGAGAA
GTTCTGGAAGCCACCCAGCACTCCCCGGGCATACTGGAACAGGGAACAGGAGAAGCTGAACAGGTGGTAC
AATCCCATCTTGAACAGGGTGGCCAATCAGACAGGGGAGCTAGCCACATCTCCAAACACAAGTCACCTGA
GCTATTGTGAACCAGACTCGACGGTCATGACAGCTGTGACAGATTTTAATAATCTGCCGGACAGATTTAA
AGACTTTCTCTTGTATTTGAGATGCCGGAATTACTCGCTGCTTATAGATCAACCGAAGAAATGTGCAAAG
AAGCCCTTCTTACTATTGGCGATAAAGTCCCTCATTCCACATTTTGCCAGAAGGCAAGCAATTCGGGAGT
CTTGGGGCCGAGAAACCAACGTAGGGAACCAGACAGTAGTGAGGGTCTTCCTGTTGGGCAAGACACCCCC
AGAGGACAACCACCCTGACCTTTCGGACATGCTTAAGTTTGAGAGTGACAAGCACCAGGACATCCTCATG
TGGAACTATAGAGACACATTCTTCAACCTGTCCCTGAAGGAAGTGCTGTTTCTTAGGTGGGTGAGCACTT
CCTGTCCAGACGCAGAGTTTGTCTTCAAGGGCGATGATGACGTGTTTGTGAACACCCATCACATCCTTAA
TTACTTGAATAGCTTATCCAAGAGCAAAGCCAAAGACTTGTTCATAGGTGACGTGATCCACAATGCTGGG
CCTCACCGGGATAAGAAACTGAAGTACTACATCCCAGAAGTCTTCTACACCGGCGTCTACCCACCGTATG
CCGGGGGTGGTGGATTCCTGTACTCCGGCCCCCTTGCCTTGAGGCTGTACAGTGCGACTAGCCGGGTCCA
TCTCTACCCTATTGATGATGTTTATACGGGAATGTGCCTTCAGAAACTGGGCCTTGTTCCAGAGAAGCAC
AAAGGCTTCAGGACATTTGATATTGAAGAGAAAAATAAGAAAAATATTTGTTCCTATATAGACCTAATGT
TAGTACATAGCAGAAAACCTCAAGAGATGATTGATATCTGGTCTCAGTTGCAAAGTCCTAATTTAAAATG
CTGA

Translation (397 aa):
MSVGRRRVKLLGILMMANVFIYLIVEVSKNSSQDKNGKGGVIIPKEKFWKPPSTPRAYWNREQEKLNRWY
NPILNRVANQTGELATSPNTSHLSYCEPDSTVMTAVTDFNNLPDRFKDFLLYLRCRNYSLLIDQPKKCAK
KPFLLLAIKSLIPHFARRQAIRESWGRETNVGNQTVVRVFLLGKTPPEDNHPDLSDMLKFESDKHQDILM
WNYRDTFFNLSLKEVLFLRWVSTSCPDAEFVFKGDDDVFVNTHHILNYLNSLSKSKAKDLFIGDVIHNAG
PHRDKKLKYYIPEVFYTGVYPPYAGGGGFLYSGPLALRLYSATSRVHLYPIDDVYTGMCLQKLGLVPEKH
KGFRTFDIEEKNKKNICSYIDLMLVHSRKPQEMIDIWSQLQSPNLKC


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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