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Report for CCDS2446.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2446.1 Public Homo sapiens 2 SLC4A3 24 110 108 CCDS HistoryNCBI Gene:6508Re-query CCDS DB by CCDS ID:2446.1Re-query CCDS DB by GeneID:6508See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2446.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000273063.10 ENSP00000273063.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000273063.10Link to Ensembl Protein Viewer:ENSP00000273063.6Re-query CCDS DB by Nucleotide ID:ENST00000273063Re-query CCDS DB by Protein ID:ENSP00000273063
Original member Current member NCBI NM_001326559.2 NP_001313488.2 Accepted alive Link to Nucleotide Sequence:NM_001326559.2Link to Protein Sequence:NP_001313488.2Re-query CCDS DB by Nucleotide ID:NM_001326559Re-query CCDS DB by Protein ID:NP_001313488Link to BLAST:NP_001313488.2
Original member Current member NCBI NM_201574.3 NP_963868.3 Accepted alive Link to Nucleotide Sequence:NM_201574.3Link to Protein Sequence:NP_963868.3Re-query CCDS DB by Nucleotide ID:NM_201574Re-query CCDS DB by Protein ID:NP_963868Link to BLAST:NP_963868.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001313488.2 1259 P48751-3 1259 100% 0 0
NP_963868.3 1259 P48751-3 1259 100% 0 0

Chromosomal Locations for CCDS 2446.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 219627993 219628043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219628405 219628570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219629144 219629421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219629580 219629695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219630072 219630352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219631968 219632116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219632262 219632442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219632874 219633009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219633274 219633457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219633880 219633979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219634420 219634604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219635271 219635496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219635673 219635891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219636302 219636450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219636680 219636874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219637581 219637811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219638164 219638253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219638703 219638869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219639482 219639735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219640430 219640599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219640789 219640962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219641651 219641728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3780 nt):
ATGGCCAACGGAGTGATCCCGCCGCCCGGGGGCGCCTCCCCCCTACCCCAGGTCCGGGTGCCCTTGGAGG
AGCCCCCTCTAAGTCCAGACGTGGAGGAGGAGGACGATGACTTGGGCAAGACCTTGGCTGTGAGCAGGTT
TGGGGACCTCATCAGCAAGCCCCCGGCCTGGGACCCCGAGAAGCCCAGCCGCAGCTACAGCGAGCGGGAC
TTTGAGTTTCACCGGCACACATCCCACCACACCCACCACCCGCTCTCAGCGCGCCTGCCTCCACCCCACA
AGCTGCGGCGGCTGCCCCCCACCTCTGCCCGGCACACCAGGAGAAAGAGGAAGAAGGAGAAAACCTCTGC
TCCTCCCTCCGAGGGGACCCCTCCCATCCAGGAGGAGGGGGGAGCTGGAGTGGATGAGGAAGAGGAGGAA
GAGGAGGAAGAGGAAGGAGAATCTGAGGCAGAACCTGTGGAGCCCCCCCACTCAGGGACCCCACAGAAGG
CAAAGTTCTCCATTGGAAGTGACGAGGATGACAGTCCAGGCCTCCCTGGGAGGGCTGCTGTCACCAAGCC
CCTGCCCTCGGTGGGCCCACACACTGACAAGAGCCCCCAGCACTCCAGCAGGCCGTGCTCTGAGCTGAGG
GACGGTGATGGAACCACCGACCTGGCCCTGTCAAGTCCAAGGCTGCTGTGTTGCCTCCCCAGCTCCCCCA
GCCCCCGGGCCCGGGCCTCCCGACTCGCTGGGGAGAAAAGCCGGCCCTGGAGCCCATCGGCCAGTTATGA
CCTGCGGGAGCGACTGTGCCCAGGCAGTGCCCTGGGCAACCCAGGTGGTCCAGAGCAGCAGGTGCCCACA
GATGAGGCGGAGGCCCAGATGCTGGGTTCTGCAGACCTGGACGACATGAAGAGTCACCGACTGGAGGACA
ACCCTGGTGTGCGGCGACACTTAGTGAAAAAGCCCTCCCGGACGCAGGGCGGGAGGGGCAGTCCCAGCGG
CCTGGCCCCCATCCTTCGCAGGAAGAAGAAGAAGAAAAAGCTGGACCGGAGGCCTCATGAGGTGTTCGTG
GAGCTGAACGAGCTGATGCTGGACCGCAGCCAGGAGCCCCACTGGCGGGAGACGGCCCGCTGGATCAAGT
TTGAGGAGGACGTGGAGGAGGAGACGGAGCGCTGGGGGAAGCCCCATGTTGCCTCGCTCTCCTTCCGTAG
CCTTCTGGAGCTCAGGAGGACCATCGCCCATGGAGCTGCCCTCCTGGACCTGGAGCAAACCACCCTGCCA
GGCATTGCACACCTCGTGGTGGAGACCATGATTGTGTCTGACCAGATCCGGCCGGAGGACAGGGCCAGCG
TCCTACGTACCCTGCTACTGAAGCACAGCCATCCCAACGATGACAAGGACAGTGGCTTCTTTCCCCGAAA
CCCATCGAGCTCCAGCATGAACTCGGTTCTGGGGAATCATCACCCAACTCCCAGCCATGGCCCTGATGGG
GCGGTGCCTACCATGGCTGATGACCTGGGGGAGCCAGCCCCACTCTGGCCACATGACCCTGACGCCAAGG
AGAAGCCCCTCCACATGCCTGGGGGAGATGGTCACCGGGGGAAAAGCCTGAAGCTGCTGGAGAAGATCCC
TGAAGATGCTGAGGCCACGGTTGTGCTTGTGGGTTGTGTGCCTTTCTTGGAGCAGCCTGCAGCAGCCTTC
GTGCGTCTGAATGAGGCTGTACTCCTGGAGTCTGTGCTTGAGGTCCCTGTCCCGGTCCGCTTCCTCTTCG
TGATGCTGGGGCCCAGCCACACCAGCACTGACTATCACGAGCTTGGGCGCTCCATTGCCACCCTTATGTC
TGACAAGCTGTTTCATGAGGCTGCCTACCAGGCAGATGACCGGCAAGACCTCCTAAGTGCCATCAGCGAG
TTCCTGGATGGCAGCATTGTGATCCCCCCGTCCGAGGTGGAGGGCCGTGACCTGCTGCGCTCCGTGGCTG
CTTTCCAGCGAGAGCTGCTTAGGAAGCGGCGAGAGCGTGAACAGACCAAAGTCGAGATGACCACACGGGG
TGGCTACACGGCCCCTGGGAAAGAACTGTCTTTGGAGTTGGGGGGCTCTGAGGCAACCCCTGAAGATGAC
CCCTTGCTGCGGACGGGCTCGGTATTTGGGGGGCTTGTGCGGGATGTGAGGCGCCGGTACCCGCACTACC
CCAGTGACCTGCGAGATGCGCTGCACTCCCAGTGTGTGGCCGCTGTGCTCTTCATCTACTTCGCAGCCCT
CAGCCCTGCCATCACCTTCGGGGGGCTGCTGGGAGAGAAGACCGAGGGGCTGATGGGCGTGTCCGAGCTG
ATCGTGTCCACCGCTGTGCTCGGCGTCCTCTTCTCTCTGCTGGGAGCTCAGCCGCTGCTTGTGGTTGGCT
TCTCTGGGCCGCTGCTTGTGTTTGAGGAAGCCTTCTTCAAGTTCTGCCGAGCCCAGGACCTGGAGTACCT
CACTGGCCGGGTGTGGGTTGGTCTCTGGCTGGTGGTCTTCGTCCTTGCCCTGGTGGCCGCCGAAGGCAGC
TTCCTGGTCCGCTACATCTCGCCTTTCACCCAGGAGATCTTTGCCTTTCTCATCTCACTCATTTTCATCT
ACGAGACCTTCTACAAGCTCTACAAGGTGTTCACAGAGCACCCACTGCTGCCGTTCTACCCCCCTGAGGG
GGCCCTGGAGGGGTCCCTGGATGCTGGTCTGGAGCCAAATGGCAGTGCCCTGCCCCCCACCGAGGGCCCC
CCCAGCCCGAGGAACCAGCCCAATACGGCACTGCTCTCACTCATCCTCATGCTCGGGACCTTCTTCATAG
CCTTCTTCCTGCGCAAGTTCAGGAACAGCCGCTTCCTGGGGGGCAAGGCTCGTCGCATCATCGGGGACTT
TGGCATCCCCATCTCCATCCTGGTGATGGTCCTGGTGGATTACTCCATCACAGACACCTACACGCAGAAG
CTGACAGTGCCTACAGGGCTCTCAGTGACCTCTCCCGATAAGCGCTCGTGGTTCATCCCACCCCTGGGCA
GTGCCCGTCCTTTCCCGCCGTGGATGATGGTGGCAGCCGCTGTTCCCGCCCTCCTCGTCCTCATCCTGAT
CTTCATGGAGACACAGATCACGGCGCTTATCGTCAGCCAGAAGGCGCGGAGGCTGCTCAAGGGCTCCGGT
TTCCACCTGGACCTGCTCCTCATTGGCTCCCTGGGGGGGCTCTGTGGGCTGTTTGGGTTGCCCTGGCTCA
CGGCTGCCACGGTCCGCTCCGTCACCCATGTCAATGCGTTGACAGTGATGCGTACTGCCATCGCGCCTGG
TGACAAGCCCCAGATCCAGGAGGTGCGGGAGCAGCGGGTCACTGGTGTGCTCATCGCCAGCCTCGTGGGC
CTGTCCATCGTCATGGGGGCTGTGCTGCGTCGGATCCCATTGGCTGTGCTCTTTGGGATCTTCCTGTACA
TGGGGGTCACGTCCCTGTCTGGTATCCAGCTGTCCCAGCGTTTGTTGCTCATCCTCATGCCGGCAAAACA
CCATCCTGAGCAGCCCTATGTGACCAAGGTGAAGACGTGGCGGATGCATCTGTTCACCTGCATCCAGCTG
GGCTGCATCGCACTGCTCTGGGTGGTCAAGTCCACGGCGGCCTCACTCGCCTTTCCCTTCCTGCTGCTGC
TCACGGTGCCTCTGAGGCATTGCCTTCTGCCCCGGCTCTTCCAGGACAGGGAGCTGCAGGCGCTGGACTC
GGAAGATGCTGAACCAAACTTCGATGAGGATGGCCAGGATGAGTACAATGAGCTGCACATGCCAGTGTGA

Translation (1259 aa):
MANGVIPPPGGASPLPQVRVPLEEPPLSPDVEEEDDDLGKTLAVSRFGDLISKPPAWDPEKPSRSYSERD
FEFHRHTSHHTHHPLSARLPPPHKLRRLPPTSARHTRRKRKKEKTSAPPSEGTPPIQEEGGAGVDEEEEE
EEEEEGESEAEPVEPPHSGTPQKAKFSIGSDEDDSPGLPGRAAVTKPLPSVGPHTDKSPQHSSRPCSELR
DGDGTTDLALSSPRLLCCLPSSPSPRARASRLAGEKSRPWSPSASYDLRERLCPGSALGNPGGPEQQVPT
DEAEAQMLGSADLDDMKSHRLEDNPGVRRHLVKKPSRTQGGRGSPSGLAPILRRKKKKKKLDRRPHEVFV
ELNELMLDRSQEPHWRETARWIKFEEDVEEETERWGKPHVASLSFRSLLELRRTIAHGAALLDLEQTTLP
GIAHLVVETMIVSDQIRPEDRASVLRTLLLKHSHPNDDKDSGFFPRNPSSSSMNSVLGNHHPTPSHGPDG
AVPTMADDLGEPAPLWPHDPDAKEKPLHMPGGDGHRGKSLKLLEKIPEDAEATVVLVGCVPFLEQPAAAF
VRLNEAVLLESVLEVPVPVRFLFVMLGPSHTSTDYHELGRSIATLMSDKLFHEAAYQADDRQDLLSAISE
FLDGSIVIPPSEVEGRDLLRSVAAFQRELLRKRREREQTKVEMTTRGGYTAPGKELSLELGGSEATPEDD
PLLRTGSVFGGLVRDVRRRYPHYPSDLRDALHSQCVAAVLFIYFAALSPAITFGGLLGEKTEGLMGVSEL
IVSTAVLGVLFSLLGAQPLLVVGFSGPLLVFEEAFFKFCRAQDLEYLTGRVWVGLWLVVFVLALVAAEGS
FLVRYISPFTQEIFAFLISLIFIYETFYKLYKVFTEHPLLPFYPPEGALEGSLDAGLEPNGSALPPTEGP
PSPRNQPNTALLSLILMLGTFFIAFFLRKFRNSRFLGGKARRIIGDFGIPISILVMVLVDYSITDTYTQK
LTVPTGLSVTSPDKRSWFIPPLGSARPFPPWMMVAAAVPALLVLILIFMETQITALIVSQKARRLLKGSG
FHLDLLLIGSLGGLCGLFGLPWLTAATVRSVTHVNALTVMRTAIAPGDKPQIQEVREQRVTGVLIASLVG
LSIVMGAVLRRIPLAVLFGIFLYMGVTSLSGIQLSQRLLLILMPAKHHPEQPYVTKVKTWRMHLFTCIQL
GCIALLWVVKSTAASLAFPFLLLLTVPLRHCLLPRLFQDRELQALDSEDAEPNFDEDGQDEYNELHMPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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