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Report for CCDS24449.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24449.1 Public Mus musculus 11 Pno1 23 108 98 CCDS HistoryNCBI Gene:66249Re-query CCDS DB by CCDS ID:24449.1Re-query CCDS DB by GeneID:66249See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24449.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020317.7 ENSMUSP00000020317.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020317.7Link to Ensembl Protein Viewer:ENSMUSP00000020317.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000020317Re-query CCDS DB by Protein ID:ENSMUSP00000020317
Original member Current member NCBI NM_025443.2 NP_079719.1 Accepted alive Link to Nucleotide Sequence:NM_025443.2Link to Protein Sequence:NP_079719.1Re-query CCDS DB by Nucleotide ID:NM_025443Re-query CCDS DB by Protein ID:NP_079719Link to BLAST:NP_079719.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079719.1 248 Q9CPS7 248 100% 0 0

Chromosomal Locations for CCDS 24449.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 17203934 17204001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 17204501 17204571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 17208789 17208906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 17209077 17209137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 17209311 17209394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 17210988 17211137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 17211313 17211507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (747 nt):
ATGGAGACGCAAAGCACCGGAACGGAGGACGGCTTTACTCCCGTCACGCACAGAGGGGGCCGCCGGGCGA
AGAAACGACAGGCTGAGCAGTCGTCAGCGGCGGGACAGGATGGAGAAGCCGGACGCATGGACACGGAGGA
GGCGCGGCCGGCGAAGAGGCCGGTCTTCCCGCCGCTCTCCGGGGATCAGCTCCTGACTGGGAAAGAAGAA
ACGAGGAAAATTCCCGTCCCAGGTAACAGATACACACCGTTGAAAGAAAACTGGATGAAGATATTTACTC
CGATTGTAGAACATTTGGGACTTCAGATACGCTTTAACCTGAAATCAAGGAATGTAGAAATCAGGACTTG
TAAAGACACCAAGGATGTCAGTGCCCTGACAAAAGCGGCCGACTTTGTGAAAGCCTTTGTTCTTGGCTTT
CAGGTGGAGGATGCACTTGCCCTTATCCGACTAGATGACCTCTTCCTAGAGTCTTTTGAAATAACTGATG
TTAAGCCCCTAAAAGGAGACCACCTGTCAAGGGCAATAGGAAGAATTGCTGGCAAAGGAGGAAAAACCAA
ATTTACCATAGAGAACGTAACACGGACACGGATTGTCCTGGCAGATGTGCACGTTCACATTCTTGGCTCT
TTCCAAAATATCAAGATGGCAAGAACAGCTATTTGCAACCTCATCCTAGGAAATCCTCCATCAAAGGTGT
ATGGCAATATCCGAGCTGTGGCCAGCAGATCAGCAGATCGGTTCTGA

Translation (248 aa):
METQSTGTEDGFTPVTHRGGRRAKKRQAEQSSAAGQDGEAGRMDTEEARPAKRPVFPPLSGDQLLTGKEE
TRKIPVPGNRYTPLKENWMKIFTPIVEHLGLQIRFNLKSRNVEIRTCKDTKDVSALTKAADFVKAFVLGF
QVEDALALIRLDDLFLESFEITDVKPLKGDHLSRAIGRIAGKGGKTKFTIENVTRTRIVLADVHVHILGS
FQNIKMARTAICNLILGNPPSKVYGNIRAVASRSADRF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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