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Report for CCDS24327.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24327.1 Public Mus musculus 10 Or6c210 23 108 98 CCDS HistoryNCBI Gene:258541Re-query CCDS DB by CCDS ID:24327.1Re-query CCDS DB by GeneID:258541See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 24327.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000104903.3 ENSMUSP00000100499.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000104903.3Link to Ensembl Protein Viewer:ENSMUSP00000100499.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000104903Re-query CCDS DB by Protein ID:ENSMUSP00000100499
Original member Current member EBI ENSMUST00000217094.1 ENSMUSP00000151047.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217094.1Link to Ensembl Protein Viewer:ENSMUSP00000151047.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217094Re-query CCDS DB by Protein ID:ENSMUSP00000151047
Original member Current member NCBI NM_146548.1 NP_666759.1 Accepted alive Link to Nucleotide Sequence:NM_146548.1Link to Protein Sequence:NP_666759.1Re-query CCDS DB by Nucleotide ID:NM_146548Re-query CCDS DB by Protein ID:NP_666759Link to BLAST:NP_666759.1

Chromosomal Locations for CCDS 24327.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 129659808 129660743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (936 nt):
ATGAGAAACCACACCATAACAACATTCATCCTACTGGGACTGACGGATGACCCACAACTGAAAACTCTGA
TCTTCATCTTTCTGTTTCTCAGCTACGTGCTGAGTATGACTGGGAACCTCACGATCATATCCCTTACCTT
TATAGATCCACACCTAAAGACTGCTATGTACTTTTTCCTACAAAATTTCTCCTTCCTAGAAATCTCATTT
ACAACTGCTTGCATTCCCAGATACTTATACAACATCTCAACAGGTGACAAGACAATTACATATAACAACT
GTGCCATTCAAATATTTTGTGTTGATCTTTTTGGTGTGACAGAATTTTTTCTGCTGGCCATCATGTCCTA
TGACCGATATGTAGCCATCTGCAAACCCCTGCATTATAGCACCATCATGAGCAGCAGGATCTGTACAAGA
CTTATCCTCTGTTGCTGGGCAGCTGGCTTGTTTGTAATCCTGCCACCACTTAGCCTGGGCCTCAAGCTGG
AATTCTGTGACTCTAATGTTATTGACCATTTTGTCTGTGATGCAAACCCCCTCCTAAAGATCTCATGTAC
AGAAACATGGCTCATAGAGCAGATAGTGATAGTTTGTGCAGTGTTTACATTTATCATGACCCTTGTGTGT
GTAAGCCTTTCCTATATATACATAATCAGGACCATTCTAAGATTTCCTTCTGCACAGCAGAGGAAAAAGG
CCTTTTCTACCTGCTCTTCCCACATGATTGTGGTTTCCATCACCTATGGCAGCTGCATCTTCATCTACAT
CAAACCATCAGCAAAGGACTCAGTGACTATCAACAAGGGTGTGACGATTCTCACCACTTCCATTGCTCCT
ATGTTGAACCCATTCATTTATACATTGAGGAACAAACAAGTCAAGCAGGCCTTCAATGACTCAGTTAAAA
GAATTGTGCTGTTCTTCCAGAAGTAG

Translation (311 aa):
MRNHTITTFILLGLTDDPQLKTLIFIFLFLSYVLSMTGNLTIISLTFIDPHLKTAMYFFLQNFSFLEISF
TTACIPRYLYNISTGDKTITYNNCAIQIFCVDLFGVTEFFLLAIMSYDRYVAICKPLHYSTIMSSRICTR
LILCCWAAGLFVILPPLSLGLKLEFCDSNVIDHFVCDANPLLKISCTETWLIEQIVIVCAVFTFIMTLVC
VSLSYIYIIRTILRFPSAQQRKKAFSTCSSHMIVVSITYGSCIFIYIKPSAKDSVTINKGVTILTTSIAP
MLNPFIYTLRNKQVKQAFNDSVKRIVLFFQK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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