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Report for CCDS2422.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2422.1 Public Homo sapiens 2 TTLL4 24 110 108 CCDS HistoryNCBI Gene:9654Re-query CCDS DB by CCDS ID:2422.1Re-query CCDS DB by GeneID:9654See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2422.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000258398.8 ENSP00000258398.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000258398.8Link to Ensembl Protein Viewer:ENSP00000258398.4Re-query CCDS DB by Nucleotide ID:ENST00000258398Re-query CCDS DB by Protein ID:ENSP00000258398
Original member Current member EBI ENST00000392102.6 ENSP00000375951.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000392102.6Link to Ensembl Protein Viewer:ENSP00000375951.1Re-query CCDS DB by Nucleotide ID:ENST00000392102Re-query CCDS DB by Protein ID:ENSP00000375951
Original member Current member NCBI NM_014640.5 NP_055455.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014640.5Link to Protein Sequence:NP_055455.3Re-query CCDS DB by Nucleotide ID:NM_014640Re-query CCDS DB by Protein ID:NP_055455Link to BLAST:NP_055455.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055455.3 1199 Q14679 1199 100% 0 0

Chromosomal Locations for CCDS 2422.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 218737677 218739163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218740058 218740167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218740521 218740584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218745109 218745233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218745691 218745801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218746155 218746231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218747003 218747194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218747290 218747372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218747597 218747725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218748105 218748227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218748836 218748934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218749253 218749387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218750009 218750146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218751704 218751806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218752763 218752973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218753115 218753185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218753584 218753669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218754134 218754389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3600 nt):
ATGGCCTCAGCAGGAACACAGCACTATAGTATTGGCCTCCGCCAGAAAAACAGCTTCAAGCAGAGTGGTC
CC
TCAGGCACAGTACCTGCCACGCCACCTGAGAAACCCTCGGAGGGCAGAGTCTGGCCTCAGGCCCATCA
G
CAAGTGAAGCCAATCTGGAAGCTGGAAAAGAAGCAAGTGGAGACACTGTCAGCAGGGTTGGGCCCAGGC
CTC
TTGGGCGTCCCACCCCAGCCAGCATATTTCTTTTGCCCCAGCACTTTATGTAGCTCTGGGACCACGG
CT
GTCATTGCAGGCCACAGCAGTTCCTGTTACCTACACTCTCTCCCGGACTTGTTCAACAGCACCCTGCT
A
TACCGCCGCTCCAGCTATAGGCAAAAACCGTACCAGCAACTGGAGTCTTTCTGCTTGCGTTCGAGCCCG
TCA
GAAAAAAGCCCTTTTTCTCTCCCTCAAAAGAGCCTCCCTGTCAGTCTCACTGCCAACAAGGCCACTT
CT
TCCATGGTCTTCTCCATGGCCCAGCCCATGGCCTCCTCATCCACAGAACCATACCTCTGCTTGGCAGC
G
GCTGGGGAAAACCCTTCAGGGAAGAGCCTGGCCTCTGCCATCTCAGGGAAGATCCCATCTCCACTCTCT
TCC
TCCTATAAGCCCATGCTGAATAATAATTCCTTCATGTGGCCAAATAGCACGCCAGTGCCTTTATTGC
AG
ACCACACAGGGCCTGAAGCCAGTATCGCCACCCAAGATCCAGCCTGTCTCCTGGCATCATTCAGGGGG
T
ACTGGAGACTGTGCACCGCAGCCTGTTGACCATAAGGTGCCCAAAAGCATTGGCACTGTCCCAGCTGAT
GCC
AGTGCCCATATCGCCTTGTCTACCGCTAGCTCCCACGACACATCCACCACCAGTGTTGCCTCTTCCT
GG
TATAACCGGAATAACTTAGCCATGAGGGCAGAGCCACTTTCCTGTGCTCTGGATGACAGCTCTGATTC
C
CAGGATCCAACTAAGGAGATTCGGTTCACTGAGGCCGTGAGGAAATTGACCGCAAGAGGCTTTGAGAAG
ATG
CCGAGGCAAGGCTGCCAGCTTGAACAGTCTAGTTTCCTGAACCCCAGCTTCCAGTGGAATGTCCTCA
AC
AGGAGCAGGCGGTGGAAACCTCCTGCGGTAAATCAGCAGTTTCCTCAGGAGGATGCTGGATCGGTCAG
G
CGGGTCCTCCCTGGTGCCTCAGATACCTTGGGGTTGGACAATACAGTCTTCTGTACCAAGCGTATCAGC
ATT
CACCTCCTTGCCTCACATGCCAGTGGGCTCAATCACAACCCTGCCTGTGAATCTGTAATTGACTCCT
CA
GCATTTGGAGAAGGCAAAGCTCCAGGTCCCCCTTTTCCTCAAACTCTTGGCATAGCCAACGTGGCCAC
C
CGCCTCTCTTCCATCCAGCTGGGCCAGTCTGAGAAGGAGAGACCTGAGGAGGCCAGGGAGCTGGACTCA
TCT
GATAGGGATATTAGTTCAGCTACTGACCTCCAGCCAGATCAGGCTGAGACTGAAGATACAGAAGAAG
AA
CTAGTAGATGGTTTGGAAGACTGTTGTAGCCGTGATGAGAATGAAGAGGAGGAGGGAGACTCAGAGTG
C
TCCTCATTAAGTGCTGTCTCCCCCAGCGAATCGGTGGCCATGATCTCTAGAAGCTGTATGGAAATTCTG
ACC
AAACCCCTTTCCAATCATGAGAAAGTTGTCCGACCAGCCCTCATCTACAGTCTCTTTCCCAACGTTC
CC
CCTACCATCTATTTTGGCACTCGGGATGAGAGAGTGGAGAAACTTCCCTGGGAACAGAGGAAGTTGCT
C
CGATGGAAGATGAGCACAGTGACCCCCAACATTGTCAAGCAGACCATTGGACGGTCCCACTTCAAAATC
AGC
AAAAGAAACGATGACTGGCTGGGCTGCTGGGGTCACCACATGAAGTCTCCTAGTTTCCGATCCATTC
GA
GAGCATCAGAAGCTAAACCATTTCCCAGGCTCATTCCAGATTGGGAGGAAGGACCGGCTATGGCGGAA
C
CTGTCACGTATGCAGAGCCGCTTTGGCAAGAAGGAGTTCAGTTTCTTCCCCCAGTCCTTTATCCTGCCC
CAG
GACGCCAAGCTCCTGCGCAAAGCGTGGGAGAGCAGCAGCCGCCAAAAGTGGATTGTGAAGCCACCAG
CA
TCAGCTCGAGGCATTGGCATCCAGGTTATTCACAAGTGGAGTCAGCTCCCCAAGCGAAGGCCCCTCCT
G
GTACAGAGGTATCTACACAAACCCTACCTCATCAGCGGCAGCAAGTTTGACCTGCGGATCTATGTTTAT
GTC
ACTTCCTACGATCCTCTGCGGATTTACCTCTTTTCAGATGGACTGGTCCGCTTTGCCAGTTGCAAGT
AT
TCGCCTTCCATGAAGAGCCTTGGCAATAAGTTCATGCACCTGACCAACTACAGTGTCAATAAAAAGAA
T
GCCGAGTACCAGGCCAATGCAGATGAAATGGCTTGCCAGGGCCACAAATGGGCACTGAAGGCTTTGTGG
AAC
TACCTGAGCCAGAAGGGAGTCAATAGCGACGCCATCTGGGAGAAGATAAAGGATGTTGTTGTCAAAA
CT
ATCATCTCGTCAGAGCCCTATGTGACCAGCCTGCTCAAGATGTATGTGCGACGGCCCTATAGCTGCCA
T
GAACTCTTTGGTTTTGACATCATGCTAGACGAAAACCTCAAGCCCTGGGTCCTGGAAGTCAACATTTCC
CCA
AGCCTCCACTCCAGCTCTCCACTGGATATCAGCATCAAAGGCCAGATGATTCGTGACCTTCTGAATC
TG
GCAGGTTTTGTCCTGCCCAATGCAGAGGATATCATTTCCAGCCCCAGCAGCTGCAGCAGCTCCACCAC
C
AGCCTGCCCACCTCCCCTGGGGACAAATGTCGAATGGCTCCAGAGCATGTCACTGCACAGAAGATGAAG
AAA
GCCTATTATCTGACCCAGAAAATTCCTGATCAGGACTTCTATGCATCTGTGCTGGATGTCCTGACAC
CA
GATGATGTTCGGATTCTGGTTGAGATGGAAGATGAGTTTTCTCGCCGTGGTCAGTTTGAACGAATTTT
T
CCTTCTCATATCTCCTCTCGCTATCTCCGCTTTTTTGAGCAGCCACGATATTTCAACATTCTCACCACC
CAA
TGGGAACAGAAATACCATGGCAACAAGCTTAAAGGAGTAGATCTGCTCCGGAGTTGGTGCTACAAAG
GG
TTCCACATGGGAGTTGTCTCTGATTCTGCTCCAGTGTGGTCTCTCCCGACATCACTTCTGACTATCTC
A
AAGGATGACGTGATACTCAATGCCTTCAGCAAATCAGAGACTAGCAAGCTGGGAAAACAAAGCTCCTGT
GAG
GTTAGCCTACTACTCTCTGAAGACGGGACCACGCCCAAATCCAAGAAGACTCAAGCTGGCCTTTCCC
CT
TATCCCCAGAAACCCAGTTCCTCAAAGGACAGTGAGGACACCAGCAAAGAGCCCAGCCTTTCTACCCA
G
ACGTTACCTGTGATCAAGTGCTCTGGGCAGACTTCAAGACTTTCTGCTTCCTCCACTTTCCAGTCAATC
AGT
GACTCCCTCCTGGCTGTGAGCCCATAA


Translation (1199 aa):
MASAGTQHYSIGLRQKNSFKQSGPSGTVPATPPEKPSEGRVWPQAHQQVKPIWKLEKKQVETLSAGLGPG
L
LGVPPQPAYFFCPSTLCSSGTTAVIAGHSSSCYLHSLPDLFNSTLLYRRSSYRQKPYQQLESFCLRSSP
S
EKSPFSLPQKSLPVSLTANKATSSMVFSMAQPMASSSTEPYLCLAAAGENPSGKSLASAISGKIPSPLS
S
SYKPMLNNNSFMWPNSTPVPLLQTTQGLKPVSPPKIQPVSWHHSGGTGDCAPQPVDHKVPKSIGTVPAD
A
SAHIALSTASSHDTSTTSVASSWYNRNNLAMRAEPLSCALDDSSDSQDPTKEIRFTEAVRKLTARGFEK
M
PRQGCQLEQSSFLNPSFQWNVLNRSRRWKPPAVNQQFPQEDAGSVRRVLPGASDTLGLDNTVFCTKRIS
I
HLLASHASGLNHNPACESVIDSSAFGEGKAPGPPFPQTLGIANVATRLSSIQLGQSEKERPEEARELDS
S
DRDI
SSATDLQPDQAETEDTEEELVDGLEDCCSRDENEEEEGDSECSSLSAVSPSESVAMISRSCMEIL
T
KPLSNHEKVVRPALIYSLFPNVPPTIYFGTRDER
VEKLPWEQRKLLRWKMSTVTPNIVKQTIGRSHFKI
S
K
RNDDWLGCWGHHMKSPSFRSIREHQKLNHFPGSFQIGRKDRLWRNLSRMQSRFGKKEFSFFPQSFILP
Q
DAKLLRKAWESSSRQKWIVKP
PASARGIGIQVIHKWSQLPKRRPLLVQRYLHKPYLISGSKFDLRIYVY
V
TSYDPLRIYLFSDGLVRFASC
KYSPSMKSLGNKFMHLTNYSVNKKNAEYQANADEMACQGHKWALKALW
N
YLSQKGVNSDAIWEKIKDVVVKTII
SSEPYVTSLLKMYVRRPYSCHELFGFDIMLDENLKPWVLEVNIS
P
SLHSSSPLDISIKGQMIRDLLNLAGFVLPNAEDIISSPSSCSSSTTSLPTSPGDKCRMAPEHVTAQKMK
K
AYYLTQKIPDQ
DFYASVLDVLTPDDVRILVEMEDEFSRRGQFERIFPSHISSRYLRFFEQPRYFNILTT
Q
WEQKYHGNKLK
GVDLLRSWCYKGFHMGVVSDSAPVWSLPTSLLTISKDDVILNAFSKSETSKLGKQSSC
E
VSLLLSEDGTTPKSKKTQAGLSPYPQKPSSSKDSEDTSKEPSLSTQTLPVIKCSGQTSRLSASSTFQSI
S
DSLLAVSP




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser