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Report for CCDS24091.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24091.2 Public Mus musculus 10 Abtb3 23 108 98 CCDS HistoryNCBI Gene:74007Re-query CCDS DB by CCDS ID:24091.2Re-query CCDS DB by GeneID:74007See the combined annotation on chromosome 10 in Sequence Viewer

Public Note for CCDS 24091.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 24091.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105307.7 ENSMUSP00000100944.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105307.7Link to Ensembl Protein Viewer:ENSMUSP00000100944.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105307Re-query CCDS DB by Protein ID:ENSMUSP00000100944
Original member Current member NCBI NM_028709.2 NP_082985.2 Accepted alive Link to Nucleotide Sequence:NM_028709.2Link to Protein Sequence:NP_082985.2Re-query CCDS DB by Nucleotide ID:NM_028709Re-query CCDS DB by Protein ID:NP_082985Link to BLAST:NP_082985.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082985.2 1109 Q6GQW0-1 1109 100% 0 0

Chromosomal Locations for CCDS 24091.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 85387329 85388478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 85546442 85546591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 85561505 85561709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 85598725 85598877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 85624903 85625068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 85627197 85627286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 85629212 85629313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 85631088 85631181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 85631293 85631428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 85632089 85632309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 85633684 85633862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 85640503 85640608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 85645488 85645590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 85647712 85647793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 85651607 85651675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 85654478 85654591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 85658140 85658349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3330 nt):
ATGGCCAGGAGAGGTAAGAAGCCTGTGGTGCGAACGCTGGAAGATCTGACGCTGGACTCGGGTTATGGTG
GCGCGGCGGACTCTGTGCGCTCCTCCAACTTGTCTCTGTGCTGTTCTGACTCTCACCCGGCGTCCCCGTA
TGGCGGGAGCTGCTGGCCGCCTTTAGCTGACTCCATGCACAGCCGGCACAACAGCTTTGACACCGTCAAC
ACTGCCCTGGTGGAAGACTCCGAGGGGCTGGACTGCGCCGGTCAGCACTGCTCGCGGTTGCTGCCGGACC
TCGACGAGGTCCCCTGGACCCTCCAGGAACTGGAGTTGCTGCTGCTGCGCTCGCGGGATCCCCGGGCAGG
CCCAGCGGTCCCCGGCAGCCTGCCCAAGGACGCGCTGGCCAAGCTCTCGATGCTGGTAAGCCGGGCTCTA
GTGCGCATCGCTAAAGAGGCGCAGCGCCTGAGCCTGCGCTTCGCCAAGTGCACCAAGTACGAGATCCAGA
GTGCCATGGAGATCGTACTGTCCTGGGGCCTGGCGGCTCACTGCACCGCTGCCGCGCTGGCCGCGCTGTC
CCTCTATAACATGAGCAGCGCTGGCGGCGACCGCTTGGGCCGTGGCAAGTCGGCGCGCTGCGGCCTCACC
TTCTCCGTGGGCCGCGTGTACCGCTGGATGGTGGACAGCCGCGTGGCGCTGCGCATCCACGAGCATGCCG
CCATCTACCTGACCGCCTGTATGGAGAGTCTCTTCCGGGACATCTACTCGCGGGTGTTGGCCTCCGGGCT
ACCTCGTAGCTGTAGCGGTCCTGGCCCTGGCTCCAGCTCCGGTTCTGGCCCAGGCCCCGGCTCAGGCCCC
GGAGCCCCTGCAGCGGATAAGGAGCGCGAGACTCCGGGAGGGGGAGCGGCGAGCGGTGGCCCTTGCAGCG
CAGCCAGCAGCGCCAGCGGGGGCAGTAGTTGTTGCGCCCCGCCAGCCACGGCGGCGACCGCAGTCCCGCC
AACCACAGCCACCGCCGCCGTCGCCGCCAACCATCATCACCACCACCACACGCTTCACGAAGCGCCCAAA
TTCACCGTGGAGACCCTGGAGCACACGGTCAACAACGACTCGGAAATCTGGGGGCTCTTGCAGCCCTACC
AGCACCTCATCTGTGGGAAGAACGCCAGTGGTGTGCTGAGCCTGCCAGAGAGCCTGAACCTGCACCGAGA
CCCACAGCGGCCCAGCAAGCCGGGAGAGCTCCCCATGTTCAGCCAGTCAGAGCTGAGGACCATCGAGCAG
TCCCTGCTGGCCACACGGGTGGGCAGCATCGCCGAGCTCAGTGACCTTGTGTCCCGGGCGATGCACCATC
TACAGCCCCTCAATGCGAAGCACCACGGTAATGGCACGCCCATGCACCACAAGCAGGGGGCGCTCTACTG
GGAGCCAGAGGCCCTGTACACGCTCTGCTACTTCATGCACTGCCCGCAGATGGAGTGGGAGAATCCCAAC
GTGGAACCTTCCAAGGTCAACCTCCAGGTGGAAAGGCCCTTCCTCGTGCTGCCCCCTCTCATGGAGTGGA
TCCGAGTGGCCGTGGCGCATGCCGGCCACCGCCGCAGCTTTTCTATGGATAGCGACGATGTCCGCCAAGC
CGCCCGGCTGCTGCTTCCGGGAGTGGACTGCGAGCCGCGCCAGCTCAAGGCGGACGACTGCTTTTGTGCT
TCTCGGAAGCTGGACGCCGTGGCCATCGAAGCCAAGTTCAAGCAGGACTTGGGCTTCCGGATGCTGAATT
GTGGACGGACCGACCTGGTGAAGCAGGCAGTGTCTTTGCTGGGGCCGGATGGAATCAACACCATGAGCGA
ACAGGGTATGACCCCCTTGATGTACGCCTGCGTCCGTGGGGACGAGGCAATGGTGCAGATGCTGCTGGAT
GCCGGAGCTGACCTGAATGTGGAGGTTGTCAGTACTCCTCATAAATATCCATCCGTCCACCCCGAGACCC
GCCATTGGACGGCTCTGACTTTTGCTGTGTTGCATGGACATATTCCTGTAGTTCAGCTCCTCCTGGATGC
TGGGGCCAAGGTGGAAGGCTCTGTGGAGCATGGCGAGGAGAACTATTCAGAAACTCCCCTCCAGCTTGCA
GCCGCTGTTGGAAATTTTGAGCTGGTTAGTTTGCTGTTGGAGCGTGGTGCGGATCCCCTGATAGGAACCA
TGTACAGGAATGGAATTTCTACAACCCCCCAGGGTGATATGAACTCTTTCAGCCAGGCCGCAGCCCATGG
ACACAGGAATGTGTTCCGCAAACTGCTCGCTCAGCCAGAGAAGGAGAAGAGCGATATCCTGTCCCTGGAG
GAGATTCTGGCTGAGGGGACTGACCTGGCAGAAACAGCCCCGCCCCCCTTGTGTGCCAGCCGCAACAGCA
AGGCCAAACTGAGGGCCCTGAGGGAGGCCATGTATCACAGCGCTGAGCACGGCTACGTGGATGTCACAAT
TGATATCAGGAGTATAGGTGTCCCATGGACTCTACACACATGGCTGGAGTCACTTCGGATTGCCTTCCAG
CAACACCGCAGACCTCTCATCCAGTGTTTGCTCAAGGAGTTCAAGACCATTCAAGAGGAGGAGTACACAG
AGGAGCTAGTCACCCAAGGCCTGCCCCTGATGTTTGAGATCTTAAAAGCAAGCAAGAATGAAGTGATCAG
CCAGCAGCTGTGCGTCATCTTCACACACTGTTACGGTCCCTACCCCATCCCCAAGCTCACGGAGATCAAG
AGGAAGCAGACCTCACGCCTGGACCCTCATTTTCTTAACAATAAAGAGATGTCCGACGTGACCTTTCTGG
TAGAGGGAAGACCCTTCTACGCTCACAAAGTGCTCTTGTTCACAGCCTCTCCCAGGTTCAAGGCCCTCCT
CTCCAGCAAGCCAACAAATGACAACACCTGCATAGAGATTGGCTACGTGAAGTATCCCATCTTCCAGCTC
GTCATGCAGTATCTCTACTACGGTGGCCCAGAGTCACTTCTCATTAAAAACAATGAGATCATGGAGCTTC
TGTCTGCTGCTAAATTTTTCCAGCTGGAGGCTCTGCAGCGACACTGTGAGATTATCTGTGCAAAAAGCAT
CAATACTGACAACTGTGTGGATATCTACAGCCACGCCAAGTTCCTTGGGGTGACAGAGCTCTCGGCGTAC
TGTGAAGGCTACTTTCTTAAAAATATGATGGTCCTTATTGAAAACGAAGCGTTCAAGCAGCTCCTGTACG
ACAAAAATGGCGAAGGGGCGGGCCAGGATGTGCTTCAGGACCTACAGAGGACGTTGGCCATTAGGATTCA
GTCTATCCACCTGTCGTCTTCCAAGGGTTCCGTGGTATGA

Translation (1109 aa):
MARRGKKPVVRTLEDLTLDSGYGGAADSVRSSNLSLCCSDSHPASPYGGSCWPPLADSMHSRHNSFDTVN
TALVEDSEGLDCAGQHCSRLLPDLDEVPWTLQELELLLLRSRDPRAGPAVPGSLPKDALAKLSMLVSRAL
VRIAKEAQRLSLRFAKCTKYEIQSAMEIVLSWGLAAHCTAAALAALSLYNMSSAGGDRLGRGKSARCGLT
FSVGRVYRWMVDSRVALRIHEHAAIYLTACMESLFRDIYSRVLASGLPRSCSGPGPGSSSGSGPGPGSGP
GAPAADKERETPGGGAASGGPCSAASSASGGSSCCAPPATAATAVPPTTATAAVAANHHHHHHTLHEAPK
FTVETLEHTVNNDSEIWGLLQPYQHLICGKNASGVLSLPESLNLHRDPQRPSKPGELPMFSQSELRTIEQ
SLLATRVGSIAELSDLVSRAMHHLQPLNAKHHGNGTPMHHKQGALYWEPEALYTLCYFMHCPQMEWENPN
VEPSKVNLQVERPFLVLPPLMEWIRVAVAHAGHRRSFSMDSDDVRQAARLLLPGVDCEPRQLKADDCFCA
SRKLDAVAIEAKFKQDLGFRMLNCGRTDLVKQAVSLLGPDGINTMSEQGMTPLMYACVRGDEAMVQMLLD
AGADLNVEVVSTPHKYPSVHPETRHWTALTFAVLHGHIPVVQLLLDAGAKVEGSVEHGEENYSETPLQLA
AAVGNFELVSLLLERGADPLIGTMYRNGISTTPQGDMNSFSQAAAHGHRNVFRKLLAQPEKEKSDILSLE
EILAEGTDLAETAPPPLCASRNSKAKLRALREAMYHSAEHGYVDVTIDIRSIGVPWTLHTWLESLRIAFQ
QHRRPLIQCLLKEFKTIQEEEYTEELVTQGLPLMFEILKASKNEVISQQLCVIFTHCYGPYPIPKLTEIK
RKQTSRLDPHFLNNKEMSDVTFLVEGRPFYAHKVLLFTASPRFKALLSSKPTNDNTCIEIGYVKYPIFQL
VMQYLYYGGPESLLIKNNEIMELLSAAKFFQLEALQRHCEIICAKSINTDNCVDIYSHAKFLGVTELSAY
CEGYFLKNMMVLIENEAFKQLLYDKNGEGAGQDVLQDLQRTLAIRIQSIHLSSSKGSVV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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