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Report for CCDS24046.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24046.1 Public Mus musculus 10 Nmrk2 23 108 98 CCDS HistoryNCBI Gene:69564Re-query CCDS DB by CCDS ID:24046.1Re-query CCDS DB by GeneID:69564See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 24046.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000005069.7 ENSMUSP00000005069.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000005069.7Link to Ensembl Protein Viewer:ENSMUSP00000005069.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000005069Re-query CCDS DB by Protein ID:ENSMUSP00000005069
Original member Current member NCBI NM_027120.2 NP_081396.1 Accepted alive Link to Nucleotide Sequence:NM_027120.2Link to Protein Sequence:NP_081396.1Re-query CCDS DB by Nucleotide ID:NM_027120Re-query CCDS DB by Protein ID:NP_081396Link to BLAST:NP_081396.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081396.1 195 Q9D7C9 195 100% 0 0

Chromosomal Locations for CCDS 24046.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 81199361 81199446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81199604 81199710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81200025 81200096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81200292 81200448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81200532 81200580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81200891 81200981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81201951 81201976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (588 nt):
ATGAAACTCATCATAGGCATTGGAGGGGTGACCAACGGTGGGAAGACCACCCTGACCAACAGCCTCCTCA
AGGCGCTGCCCAACTGCTGCGTGATCCATCAGGATGACTTCTTCAAGCCCCAGGACCAAATAGCAGTCGG
AGAGGACGGCTTTAAACAGTGGGACGTGCTTGAGTCCCTGGACATGGAGACCATGCTCAGCACGGTGCAG
GCCTGGGTGAAGGATCCACACAAGTTTGCACGCGCTCATGGCGTCAGCCTTCAGTCAGGTGCCTCGGACA
CCCACGTACTCCTCCTCGAGGGTTTCCTACTGTACAGCTACAGGCCCCTGGTGGACTTGTACAGCCAACG
CTACTTCCTGACCGTGCCGTATGAGGAATGCAAGCGGAGGAGAAGAAGCCGTACTTACATGGTCCCTGAT
CCTCCTGGCCTGTTTGATGGTCACGTGTGGCCCATGTACCAGAAGTATAGACGGGAGATGGAGCAGGACG
GGGTGGAAGTGGTCTATTTAGATGGCATGAAGTCCCCGGAGGGACTCTTCCATCAAGTTCTGGAGGATAT
TCAAAACAGACTGCTCAACACATCCTAG

Translation (195 aa):
MKLIIGIGGVTNGGKTTLTNSLLKALPNCCVIHQDDFFKPQDQIAVGEDGFKQWDVLESLDMETMLSTVQ
AWVKDPHKFARAHGVSLQSGASDTHVLLLEGFLLYSYRPLVDLYSQRYFLTVPYEECKRRRRSRTYMVPD
PPGLFDGHVWPMYQKYRREMEQDGVEVVYLDGMKSPEGLFHQVLEDIQNRLLNTS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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