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Report for CCDS23972.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23972.1 Public Mus musculus 10 Or7a37 23 108 98 CCDS HistoryNCBI Gene:259044Re-query CCDS DB by CCDS ID:23972.1Re-query CCDS DB by GeneID:259044See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23972.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039718.8 ENSMUSP00000038992.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039718.8Link to Ensembl Protein Viewer:ENSMUSP00000038992.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000039718Re-query CCDS DB by Protein ID:ENSMUSP00000038992
Original member Current member EBI ENSMUST00000205193.2 ENSMUSP00000145073.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000205193.2Link to Ensembl Protein Viewer:ENSMUSP00000145073.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000205193Re-query CCDS DB by Protein ID:ENSMUSP00000145073
Original member Current member EBI ENSMUST00000204849.1 ENSMUSP00000145454.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000204849.1Link to Ensembl Protein Viewer:ENSMUSP00000145454.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000204849Re-query CCDS DB by Protein ID:ENSMUSP00000145454
Original member Current member NCBI NM_147042.2 NP_667253.1 Accepted alive Link to Nucleotide Sequence:NM_147042.2Link to Protein Sequence:NP_667253.1Re-query CCDS DB by Nucleotide ID:NM_147042Re-query CCDS DB by Protein ID:NP_667253Link to BLAST:NP_667253.1

Chromosomal Locations for CCDS 23972.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 78969651 78970580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (930 nt):
ATGGACTCAAGTAACAGGACAAGAGTTGCAGAATTTCTTCTTCTTGGATTTTTAGAAAACAAAGACCTGC
AACCCATTATTTATGGTCTTTTCCTCTCTATGTACCTGGTTACTGTTGTTGGGAACATGTTAATTATTGT
GGCTATTATTTCAGGCCCCCGACTGCATACCCCCATGTATTTCTTCCTGTCTAATCTGTCCTTTGTGGAC
ATCTGTTTCATTTCAACTACTATTCCAAAGATGTTAGTAAACATACAGACCCAAAACAAGGTCATCACCT
ATGCAGGGTGCATTACCCAGATATACTTTTTCTTGCTTTTTGTGGAATTGGACAACTTCTTGCTCACTAT
CATGGCCTATGACCGTTATGTGGCCATCTGTCACCCTATGCGCTACACAGTTATCATGAACTACCAGCTC
TGTGGATTTCTGGTTCTGGTGTCTTGGATTGTAAGTGTTCTGCATGCCTTATTTCAAAGCTTAATGATGT
TGGAGCTGCCCTTCTGCACACAGCCAGAAATCCCACACTTCTTCTGTGAACCTAATCAGGTGATTCAACT
CACTTGTTCTGATGCATTTCTTAATGATATGGTGATATATTTTACACTTGTGCTGCTAGCTATTGTTCCT
CTTGCTGGTGTCTTCTATTCTTACTTCAAGATAGTGTCCTCCATACGTGCAATGTCCTCAGTTCATGGGA
AGTACAAAGCATTCTCCACCTGTGCATCTCATCTATTAGTTGTATCATTATTTTACTGTACAGGCCTAGG
AGTGTACCTCAGTTCTGCTGCAAACCATGGGTCACAAACAAGTGCAACAGCCTCAGTCACGTACACTGTA
GTTACCCCTATGATGAACCCTTTCATCTATAGTCTTAGGAATAAAGATGTTAAGAGTGCCCTAAAAAGAC
TCTTCGTGAGGAAATTATAA

Translation (309 aa):
MDSSNRTRVAEFLLLGFLENKDLQPIIYGLFLSMYLVTVVGNMLIIVAIISGPRLHTPMYFFLSNLSFVD
ICFISTTIPKMLVNIQTQNKVITYAGCITQIYFFLLFVELDNFLLTIMAYDRYVAICHPMRYTVIMNYQL
CGFLVLVSWIVSVLHALFQSLMMLELPFCTQPEIPHFFCEPNQVIQLTCSDAFLNDMVIYFTLVLLAIVP
LAGVFYSYFKIVSSIRAMSSVHGKYKAFSTCASHLLVVSLFYCTGLGVYLSSAANHGSQTSATASVTYTV
VTPMMNPFIYSLRNKDVKSALKRLFVRKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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