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Report for CCDS23867.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23867.1 Public Mus musculus 10 Dnajb12 23 108 98 CCDS HistoryNCBI Gene:56709Re-query CCDS DB by CCDS ID:23867.1Re-query CCDS DB by GeneID:56709See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23867.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020309.6 ENSMUSP00000020309.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020309.6Link to Ensembl Protein Viewer:ENSMUSP00000020309.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000020309Re-query CCDS DB by Protein ID:ENSMUSP00000020309
Original member Current member EBI ENSMUST00000142819.7 ENSMUSP00000118088.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000142819.7Link to Ensembl Protein Viewer:ENSMUSP00000118088.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000142819Re-query CCDS DB by Protein ID:ENSMUSP00000118088
Original member Current member EBI ENSMUST00000146590.7 ENSMUSP00000122056.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000146590.7Link to Ensembl Protein Viewer:ENSMUSP00000122056.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000146590Re-query CCDS DB by Protein ID:ENSMUSP00000122056
Original member NCBI NM_019965.2 NP_064349.2 Updated not alive Link to Nucleotide Sequence:NM_019965.2Link to Protein Sequence:NP_064349.2Re-query CCDS DB by Nucleotide ID:NM_019965Re-query CCDS DB by Protein ID:NP_064349
Current member NCBI NM_019965.3 NP_064349.2 Accepted alive Link to Nucleotide Sequence:NM_019965.3Link to Protein Sequence:NP_064349.2Re-query CCDS DB by Nucleotide ID:NM_019965Re-query CCDS DB by Protein ID:NP_064349Link to BLAST:NP_064349.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064349.2 376 Q9QYI4 376 100% 0 0

Chromosomal Locations for CCDS 23867.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 59879678 59879810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59890028 59890208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59890840 59890985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59892672 59892857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59892938 59893017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59894231 59894340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59895588 59895760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59896350 59896471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1131 nt):
ATGGAATCCAACAAGGATGAAGCCGAGCGCTGTATCAGCATCGCCCTCAAGGCCATCCAAAGCAACCAGC
CCGAGCGGGCGCTGCGCTTCCTGGAGAAGGCGCAGCGGCTCTACCCGACGCCACGAGTCAGCGCACTGAT
CGAGTCCCTCAACCAAAAACCACAGTCCACCGGTGATCACCCTCAACCCACAGACACTACCCATACCACC
ACCAAGAAGGCAGGCGGGACCGAAACCCCCTCAGCCAACGGCGAGGCAGGAGGAGGGGAGAGCGCCAAGG
GCTATACCTCAGAGCAGGTGGCAGCTGTGAAAAGGGTCAAGCAGTGTAAAGATTACTATGAGATCCTTGG
GGTAAGCAGAAGTGCCTCAGATGAGGACCTAAAGAAGGCCTACCGCAAGCTGGCCCTCAAGTTCCATCCA
GACAAGAACCATGCGCCTGGGGCCACTGAAGCTTTCAAAGCCATTGGCACAGCGTATGCCGTACTCAGCA
ACCCAGAGAAAAGGAAACAGTACGACCAGTTTGGTGATGACAAGAGCCAGGCTGCCCGGCACGGCCACAG
CCACGGGGACTTCCACCGAGGCTTTGAGGCTGACATCTCCCCAGAAGACCTCTTTAACATGTTCTTTGGT
GGCGGCTTTCCTTCCAGTAACGTTCATGTCTACAGCAATGGCCGAATGCGGTACACCTACCAGCAGAGGC
AAGACCGCAGAGACAACCAGGGTGATGGCGGGCTAGGAGTGTTCGTGCAGCTGATGCCCATCCTCATCCT
CATCCTCGTGTCTGCGCTCAGCCAGCTCATGGTGTCCAGTCCTCCCTACAGCCTGAGCCCGAGACCGTCA
GTGGGCCACATCCACAAGCGAGTCACTGACCACCTGAACGTCGCCTACTACGTGGCAGACACCTTCTCCG
AAGAGTACACGGGCTCCAGCCTCAAAACAGTGGAACGGAATGTAGAGGATGACTACATCGCCAACCTGCG
CAACAACTGCTGGAAGGAGAAGCAGCAGAAGGAAGGCTTGCTGTACCGAGCCCGCTACTTTGGTGACACA
GACATGTACCACAGAGCACAGAAGATGGGCACCCCGAGTTGCAATCGGCTGTCAGAGGTGCAGGCCTCCC
TGCATGGATAG

Translation (376 aa):
MESNKDEAERCISIALKAIQSNQPERALRFLEKAQRLYPTPRVSALIESLNQKPQSTGDHPQPTDTTHTT
TKKAGGTETPSANGEAGGGESAKGYTSEQVAAVKRVKQCKDYYEILGVSRSASDEDLKKAYRKLALKFHP
DKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGDDKSQAARHGHSHGDFHRGFEADISPEDLFNMFFG
GGFPSSNVHVYSNGRMRYTYQQRQDRRDNQGDGGLGVFVQLMPILILILVSALSQLMVSSPPYSLSPRPS
VGHIHKRVTDHLNVAYYVADTFSEEYTGSSLKTVERNVEDDYIANLRNNCWKEKQQKEGLLYRARYFGDT
DMYHRAQKMGTPSCNRLSEVQASLHG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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