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Report for CCDS23661.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23661.1 Public Mus musculus 9 Slc6a20b 23 108 98 CCDS HistoryNCBI Gene:22599Re-query CCDS DB by CCDS ID:23661.1Re-query CCDS DB by GeneID:22599See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23661.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026273.9 ENSMUSP00000026273.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026273.9Link to Ensembl Protein Viewer:ENSMUSP00000026273.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000026273Re-query CCDS DB by Protein ID:ENSMUSP00000026273
Original member Current member NCBI NM_011731.4 NP_035861.2 Accepted alive Link to Nucleotide Sequence:NM_011731.4Link to Protein Sequence:NP_035861.2Re-query CCDS DB by Nucleotide ID:NM_011731Re-query CCDS DB by Protein ID:NP_035861Link to BLAST:NP_035861.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035861.2 635 O88575 635 99.8425% 0 1

Chromosomal Locations for CCDS 23661.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 123594993 123595142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123596043 123596208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123597227 123597386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123598411 123598615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123603727 123603889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123604708 123604949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123607525 123607635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123608999 123609226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123610280 123610371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123611989 123612129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123632110 123632359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1908 nt):
ATGGAATCACCTTCAGCACATGCGGTCTCCCTGCCAGAGGATGAGGAGCTCCAGCCCTGGGGAGGCGCTG
GAGGACCTGGTCAGCACCCAGGAAGACCGAGGTCAACAGAGTGTGCCCACCCTGGGGTTGTGGAGAAGGT
GCGGCCAAAGTGGGACAACCCCCTGCAGTTCCTACTTGTCTGTATCTCCTATGCTGTGGGCCTGGGCAAT
GTATGGCGCTTCCCCTACCTGTGCCAGATGTATGGCGGAGGAAATTTCCTGGTCCCCTACATCATCATGC
TCATTGTGGAGGGGATGCCACTCCTGTACCTGGAGCTGGCCGTGGGACAGCGCATGCGGCAGGGCAGCAT
TGGTGCCTGGAGGACCATCAGCCCCTACCTCAGTGGTGTCGGCATTGCTAGCTTGGTGGTCTCGTTTTTG
GCCTCTGTGTACTTCAATGTCATCAACACCTGGGCTCTTTGGTACCTCTTCCACTCCTTCCAGGATCCCC
TGCCGTGGTCTGTCTGCCCACTGAATAGTAATCACACAGGCTACGATGAGGAGTGTGAGAAGGCTTCGTC
GACACAGTACTTCTGGTACAGGAAAACACTCAACATCTCACCGTCCATCCAGGAGAATGGAGGAGTGCAG
TGGGAGCCAGCGCTGTGCCTCACCCTGGCCTGGCTGATGGTCTATCTGTGCATCCTGAGAGGCACCGAAT
CTACTGGCAAGGTGGTCTATTTCACCACGTCACTGCCTTACTTTGTGCTCATCATCTACCTGGTCCGGGG
CCTCACACTCCATGGAGCCACCAATGGCCTGGCATACATGTTCACACCTAAGATTGAGCAGCTAGCCAAC
CCCAAGGCCTGGATCAATGCAGCCACGCAGATCTTCTTCTCACTGGGCTTAGGGTGTGGTGGCCTGATTG
CTTTTGCCAGCTACAACGAACCCTCCAACGACTGCCAGAAGCATGCCCTCATTGTGTCTGTCATCAATAG
TACTACTGCCATATTTTCCAGTATTGTCACCTTCTCCATCTATGGCTTCAAGGCCACCTTCAACTATGAA
AACTGCTTAAACAAGGTGATTCTGCTGCTGACCAATTCTTTTGACCTTGAAGATGGCTTTCTGACAGTCA
GCAACCTGGAGGAGGTGAAGAACTACCTGGCATCTACTTACCCAAACAAGTACAGTGAAGTGTTCCCACA
CATTAGAAACTGCAGCTTGGAATCAGAGCTGGACACGGCTGTCCAGGGCACAGGCCTGGCCTTCATCGTC
TACACTGAGGCCATTAAAAACATGGAAGTTTCCCAGCTCTGGTCAGTGCTCTACTTCTTCATGTTGCTAA
CACTGGGTATGGGAAGCATGGTGGGGACAGGAACGGCCATCCTCACCCCTCTGACTGACAGCAAGATCAT
CTCCAGCTACCTGCCCAAGGAGGCCATTTCAGGTTTGGTATGCCTCCTCAACTGTGCCATTGGCATGGTG
TTCACCATGGAGGCTGGGAACTACTGGTTTGACCTATTCAATGACTATACAGCCACGCTGTCTCTGCTGC
TCATTGTGCTGGTAGAGACCATAGCTGTGTGCTATGTGTATGGGCTAAAGAGATTTGAAAGTGACCTTCG
GGCCATGACTGGCCGCACCCTCAGCTGGTACTGGAAGGTCATGTGGGCGTTTGTGAGTCCACTGCTCATC
GTCGGCCTCTTTATCTTCTACCTGAGTGACTACATCCTCACGGGAACGCTGCAGTACCAAGCCTGGGATG
CTACTCAGGGCCACGTGGTGACTAAGGATTATCCTACATACGCACTAGCTGTCATTGGGCTTCTGGTAGC
CTCCTCCACCATGTGCATCCCTCTGGTAGCCCTGGGGACTTTTGTCACACGCCACTTCAAGATCAGAGAA
CAGTTTTCTGCAGCCTGA

Translation (635 aa):
MESPSAHAVSLPEDEELQPWGGAGGPGQHPGRPRSTECAHPGVVEKVRPKWDNPLQFLLVCISYAVGLGN
VWRFPYLCQMYGGGNFLVPYIIMLIVEGMPLLYLELAVGQRMRQGSIGAWRTISPYLSGVGIASLVVSFL
ASVYFNVINTWALWYLFHSFQDPLPWSVCPLNSNHTGYDEECEKASSTQYFWYRKTLNISPSIQENGGVQ
WEPALCLTLAWLMVYLCILRGTESTGKVVYFTTSLPYFVLIIYLVRGLTLHGATNGLAYMFTPKIEQLAN
PKAWINAATQIFFSLGLGCGGLIAFASYNEPSNDCQKHALIVSVINSTTAIFSSIVTFSIYGFKATFNYE
NCLNKVILLLTNSFDLEDGFLTVSNLEEVKNYLASTYPNKYSEVFPHIRNCSLESELDTAVQGTGLAFIV
YTEAIKNMEVSQLWSVLYFFMLLTLGMGSMVGTGTAILTPLTDSKIISSYLPKEAISGLVCLLNCAIGMV
FTMEAGNYWFDLFNDYTATLSLLLIVLVETIAVCYVYGLKRFESDLRAMTGRTLSWYWKVMWAFVSPLLI
VGLFIFYLSDYILTGTLQYQAWDATQGHVVTKDYPTYALAVIGLLVASSTMCIPLVALGTFVTRHFKIRE
QFSAA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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