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Report for CCDS23657.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23657.1 Public Mus musculus 9 Cdcp1 23 108 98 CCDS HistoryNCBI Gene:109332Re-query CCDS DB by CCDS ID:23657.1Re-query CCDS DB by GeneID:109332See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 23657.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039229.7 ENSMUSP00000042057.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039229.7Link to Ensembl Protein Viewer:ENSMUSP00000042057.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000039229Re-query CCDS DB by Protein ID:ENSMUSP00000042057
Original member Current member NCBI NM_133974.3 NP_598735.2 Accepted alive Link to Nucleotide Sequence:NM_133974.3Link to Protein Sequence:NP_598735.2Re-query CCDS DB by Nucleotide ID:NM_133974Re-query CCDS DB by Protein ID:NP_598735Link to BLAST:NP_598735.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598735.2 833 Q5U462 833 100% 0 0

Chromosomal Locations for CCDS 23657.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 123173503 123173926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123175735 123175819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123177688 123178053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123179985 123180365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123182165 123182386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123183457 123183825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123185053 123185415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123189921 123190130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123215828 123215909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2502 nt):
ATGGCCCACTCGGCCTGCGGGTTCTCAGTCGCACTGCTGGGGGCCCTGCTGCTGGGCACAGCACGCCTGC
TGCGCGGGACAGAAGCATCTGAGATTGCTCTGCCCCAGAGAAGTGGCGTCACAGTGAGCATCAAGCTGGG
GAACCCAGCCCTTCCTGTGAAAATCTGCTACATCGTCATGTCTAGACAGCATATAACCGAGTTGATTATC
AGACCTGGAGAAAGAAAGTCTTTTACCTTTAGCTGCAGCAATCCAGAGAAGCACTTTGTCTTGAAGATCG
AGAAGAATATTGACTGCATGTCAGGCCCGTGTCCTTTTGGGGAGGTTCATCTTCAGCCATCCACATCAGA
GCTACCCATCCTCAACAGAACCTTCATCTGGGATGTTAGAGCTCATAAGAGCATTGGCTTGGAGCTGCAG
TTCGCAACCCCTCGACTGAGGCAGATTGGACCAGGCGAGAGCTGTGCAGACGGGGTGACTCACTCCATCA
GTGGCCATATAGATGCCACTGAGGTCAGAATTGGGACCTTCTGCAGTAATGGCACCGTGTCCCGGATCAA
GATGCAAGAGGGTGTGAAAATGGCCTTACACCTGCCCTGGTTCCACCGCAGGAACGTCTCAGGCTTCAGT
ATTGCAAATCGGTCATCTATCAAACGCCTGTGCATCATCGAGTCAGTATTTGAGGGTGAAGGCTCAGCAA
CTCTGATGTCAGCCAACTACCCAGGAGGCTTCCCTGAAGATGAGCTTATGACCTGGCAGTTTGTTGTCCC
CGCACACCTAAGGGCCAGTGTCTCCTTCCTCAACTTCAATGTCTCCAACTGTGAGAGGAAGGAGGAACGC
GTTGAATACTATATCCCAGGCTCCACCACCAACCCAGAGGTGTTCAGGCTGGAGGACAAGCAGCCAGGAA
ACATGGCTGGGAACTTCAACCTCTCCCTGCAAGGCTGCGACCAGGATGCCCAGAGCCCAGGAATCCTTCG
GCTTCAGTTCCAGGTCCTGGTCCAACGTCCACAGGATGAAAGCAATAAAACCTACATGGTGGACCTGAGT
CGTGAGCGAACCATGTCGCTCACCATAGAGCCACGGCCAGTAAAACATGGCCGCAGGTTTGTTCCTGGGT
GCTTCGTGTGTCTAGAGTCTCGGACTTGTAGTACCAATGTCACCCTGACAGCTGGCTCCATACACAAGAT
TTCCTTCCTGTGCGATGACTTGACACGCCTGTGGGTGAATGTGGAGAAAACCCTAAGTTGCCTGGACCAC
CGCTACTGCTATAGGCAGTCCTTCAAACTGCAGGTGCCTGACTATATCCTCCAGCTGCCTGTACAGCTGC
ATGACTTCTCCTGGAAGCTACTGGTGCCCAAGGACAAGCTCAGCCTTATGCTGGTGCCAGGCCAGAAGCT
GCAGCAGCATACGCAAGAGAGGCCTTGTAACACCAGCTTCGGGTACCACGTGACCAGCACCACCCCTGGC
CAGGACCTGTACTTTGGTTCCTTCTGCTCAGGAGGCTCCATCGAGAAGATCCAGGTGAAGCAAAATAGCT
CGGTGACACTGAGAGCCTATGCTCCCAGCTTTCAACAAGAAGTCTCCAAGCAAGGCCTGATAGTGTCCTA
TACACCGTATTTCAAAGAGGAAGGCATCTTCACGGTGACCCCAGACACAAAAAACAAGGTCTACCTAAGA
TCACCCAACTGGGACCGTGGCCTGCCTGCCCTCTCCTCAGTGTCTTGGAACATCAGTGTGCCTAGCAACC
AAGTGGCTTGTCTGACCGTCTTGAAAGAGCGTTCTGGCTTGGCCTGCCAGTCAGGGCGTGCATTCATGAT
CATCCAGGAGCAGCAGTCCCGGGCAGAGGAGATCTTCAGCTTGGAGGAGGAAGTCCTGCCTAAGCCAAGT
TTCCACCATCACAGCTTCTGGGTTAACATCTCCAATTGCAGCCCCATGAATGGCAAGCAGCTAGATTTGC
TCTTCTGGGTGACTCTTACCCCGAGGACTGTAGATTTGGCTGTCGTCATTGGTGCAGCAGGAGGTGGAGC
TCTGCTGCTGTTTGCCCTGGTACTCATCATCTGCTTCGTGAAAAAGAAGAAGAAGGTGGATAAGGGTCCT
GCTGTGGGTATCTATAATGGCAATGTCAATACCCAGATGCCCCAGACCCAAAAGTTCCCGAAAGGGCGAA
AAGACAATGACTCCCATGTGTATGCTGTCATCGAAGACACCATGGTGTATGGGCACTTGCTGCAGGACTC
GGGTGGATCCTTCATCCAACCAGAGGTGGACACCTACCGGCCCTTCCAGGGCCCCATGGGAGACTGCCCT
CCCACCCCACCCCCTCTATTCTCCAGGACCCCAACTGCAAAGTTCACTGCAGAGGAGCTGGCTCCTAGTA
GCCCTCCTGAGTCTGAGAGTGAACCTTACACTTTCTCGCATCCCAACAAGGGGGAGATTGGTGTTAGGGA
GACTGACATCCCCTTACTCCATACCCAAGGACCAGTGGAGACTGAAGAGTAA

Translation (833 aa):
MAHSACGFSVALLGALLLGTARLLRGTEASEIALPQRSGVTVSIKLGNPALPVKICYIVMSRQHITELII
RPGERKSFTFSCSNPEKHFVLKIEKNIDCMSGPCPFGEVHLQPSTSELPILNRTFIWDVRAHKSIGLELQ
FATPRLRQIGPGESCADGVTHSISGHIDATEVRIGTFCSNGTVSRIKMQEGVKMALHLPWFHRRNVSGFS
IANRSSIKRLCIIESVFEGEGSATLMSANYPGGFPEDELMTWQFVVPAHLRASVSFLNFNVSNCERKEER
VEYYIPGSTTNPEVFRLEDKQPGNMAGNFNLSLQGCDQDAQSPGILRLQFQVLVQRPQDESNKTYMVDLS
RERTMSLTIEPRPVKHGRRFVPGCFVCLESRTCSTNVTLTAGSIHKISFLCDDLTRLWVNVEKTLSCLDH
RYCYRQSFKLQVPDYILQLPVQLHDFSWKLLVPKDKLSLMLVPGQKLQQHTQERPCNTSFGYHVTSTTPG
QDLYFGSFCSGGSIEKIQVKQNSSVTLRAYAPSFQQEVSKQGLIVSYTPYFKEEGIFTVTPDTKNKVYLR
SPNWDRGLPALSSVSWNISVPSNQVACLTVLKERSGLACQSGRAFMIIQEQQSRAEEIFSLEEEVLPKPS
FHHHSFWVNISNCSPMNGKQLDLLFWVTLTPRTVDLAVVIGAAGGGALLLFALVLIICFVKKKKKVDKGP
AVGIYNGNVNTQMPQTQKFPKGRKDNDSHVYAVIEDTMVYGHLLQDSGGSFIQPEVDTYRPFQGPMGDCP
PTPPPLFSRTPTAKFTAEELAPSSPPESESEPYTFSHPNKGEIGVRETDIPLLHTQGPVETEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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