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Report for CCDS23641.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23641.1 Public Mus musculus 9 Cyp8b1 23 108 98 CCDS HistoryNCBI Gene:13124Re-query CCDS DB by CCDS ID:23641.1Re-query CCDS DB by GeneID:13124See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23641.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062474.4 ENSMUSP00000052989.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062474.4Link to Ensembl Protein Viewer:ENSMUSP00000052989.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000062474Re-query CCDS DB by Protein ID:ENSMUSP00000052989
Original member Current member NCBI NM_010012.3 NP_034142.3 Accepted alive Link to Nucleotide Sequence:NM_010012.3Link to Protein Sequence:NP_034142.3Re-query CCDS DB by Nucleotide ID:NM_010012Re-query CCDS DB by Protein ID:NP_034142Link to BLAST:NP_034142.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034142.3 500 O88962 500 99.8% 0 1

Chromosomal Locations for CCDS 23641.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 121914762 121916264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1503 nt):
ATGACGCTGTGGTGTACAGTGCTAGGAGCCCTGCTCACGGTTGTGGGATGCCTGTGTCTGTCCTTGCTGC
TCAGGCACCGCAGGCCCTGGGAGCCACCTCTGGACAAGGGTTTTGTGCCCTGGCTGGGTCACTCCATGGC
TTTCCGGAAGAATATGTTTGAATTCTTGAAGGGGATGCGGGCCAAGCACGGGGATGTCTTCACGGTGCAG
CTGGGAGGCCAGTACTTCACCTTTGTCATGGACCCCCTGTCCTTTGGCCCCATCATTAAGAACACAGAGA
AAGCGCTGGACTTCCAGTCCTATGCAAAAGAACTGGTGCTCAAGGTGTTTGGGTACCAGTCTGTAGATGG
GGATCACAGGATGATCCACTTAGCTAGTACCAAGCATCTGATGGGGCAAGGCTTGGAGGAACTCAACCAG
GCCATGCTGGACAGCCTATCCTTGGTGATGCTAGGGCCTAAAGGTTCGAGTCTGGGTGCCAGCTCCTGGT
GTGAAGATGGCCTCTTTCACTTCTGCTACAGAATCCTGTTTAAGGCTGGCTTCCTGAGCTTATTCGGCTA
CACCAAGGACAAGCAGCAAGACCTGGATGAGGCCGATGAGCTGTTCAGGAAGTTCCGTCGATTTGACTTT
CTCTTCCCCAGGTTTGTCTACTCCCTACTGGGGCCCCGGGAGTGGGTGGAAGTGAGCCAGTTGCAGCGTC
TCTTCCATCAGAGACTCTCTGTGAAGCAAAACCTGGAAAAAGACGGCATAAGCTGTTGGTTAGGCTACAT
GCTTCAGTTTCTGAGGGAGCAAGGAATAGCTTCATCCATGCAGGACAAATTTAACTTTATGATGCTCTGG
GCCTCCCAGGGGAACACGGGACCCACCTGTTTCTGGGTCCTCTTATTCCTGCTGAAGCACCAGGATGCCA
TGAAGGCTGTGCGTGAGGAAGCCACCAGGGTCATGGGTAAGGCCAGGCTGGAAGCCAAGAAGTCGTTCAC
TTTCACTCCCAGTGCCCTGAAACACACTCCAGTGTTGGACAGCGTGATGGAGGAGAGTCTGCGTCTCTGT
GCCACCCCCACCCTCCTCAGGGTGGTACAGGAGGATTATGTCCTGAAGATGGCCAGCGGACAAGAGTACC
AGATCCGTCGCGGAGATAAGGTGGCTCTCTTCCCCTATCTCTCAGTACACATGGACCCCGACATCCACCC
TGAGCCCACAGCCTTCAAGTATGATCGGTTCCTCAACCCGGATGGCACCCGGAAAGTGGACTTCTACAAG
TCGGGCAAGAAGATCCACCACTACAGCATGCCTTGGGGCTCGGGTGTTTCCAAGTGCCCCGGCAGGTTCT
TTGCCCTCAGCGAGATGAAGACCTTTGTCCTTCTTATGATTATGTACTTCGACTTCAAGCTGGTCGACCC
CGACATACCTGTGCCCCCCATTGACCCAAGGCGCTGGGGCTTTGGCACCTCACAGCCTAGCCATGAGGTA
CGCTTCCTCTATCGCCTGAAGCCCGTGCAGTGA

Translation (500 aa):
MTLWCTVLGALLTVVGCLCLSLLLRHRRPWEPPLDKGFVPWLGHSMAFRKNMFEFLKGMRAKHGDVFTVQ
LGGQYFTFVMDPLSFGPIIKNTEKALDFQSYAKELVLKVFGYQSVDGDHRMIHLASTKHLMGQGLEELNQ
AMLDSLSLVMLGPKGSSLGASSWCEDGLFHFCYRILFKAGFLSLFGYTKDKQQDLDEADELFRKFRRFDF
LFPRFVYSLLGPREWVEVSQLQRLFHQRLSVKQNLEKDGISCWLGYMLQFLREQGIASSMQDKFNFMMLW
ASQGNTGPTCFWVLLFLLKHQDAMKAVREEATRVMGKARLEAKKSFTFTPSALKHTPVLDSVMEESLRLC
ATPTLLRVVQEDYVLKMASGQEYQIRRGDKVALFPYLSVHMDPDIHPEPTAFKYDRFLNPDGTRKVDFYK
SGKKIHHYSMPWGSGVSKCPGRFFALSEMKTFVLLMIMYFDFKLVDPDIPVPPIDPRRWGFGTSQPSHEV
RFLYRLKPVQ


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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