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Report for CCDS23588.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23588.1 Public Mus musculus 9 Pdcd6ip 23 108 98 CCDS HistoryNCBI Gene:18571Re-query CCDS DB by CCDS ID:23588.1Re-query CCDS DB by GeneID:18571See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23588.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035086.12 ENSMUSP00000035086.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035086.12Link to Ensembl Protein Viewer:ENSMUSP00000035086.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000035086Re-query CCDS DB by Protein ID:ENSMUSP00000035086
Original member Current member NCBI NM_011052.2 NP_035182.2 Accepted alive Link to Nucleotide Sequence:NM_011052.2Link to Protein Sequence:NP_035182.2Re-query CCDS DB by Nucleotide ID:NM_011052Re-query CCDS DB by Protein ID:NP_035182Link to BLAST:NP_035182.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035182.2 869 Q9WU78-1 869 100% 0 0

Chromosomal Locations for CCDS 23588.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 113654933 113655107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 113656017 113656207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 113657086 113657209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 113659831 113659925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 113660946 113661080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 113662269 113662517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 113671757 113671926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 113672703 113672814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 113674325 113674502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 113678306 113678429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 113679953 113680175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 113685307 113685423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 113687625 113687725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 113689575 113689728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 113691453 113691580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 113697506 113697575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 113699969 113700023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 113707899 113708107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2610 nt):
ATGGCGTCGTTCATCTGGGTGCAGCTGAAGAAGACCTCGGAGGTGGACCTGGCCAAGCCGCTGGTGAAGT
TCATCCAGCAGACGTACCCGAGCGGCGGCGAGGAGCAGGCCCAGTACTGCCGTGCGGCCGAGGAGCTCAG
CAAACTGCGGCGCTCGGCGCTCGGTCGCCCGCTGGACAAGCATGAGGGCGCCCTGGAGACGTTGCTGAGG
TATTATGATCAGATTTGTTCCATTGAACCCAAGTTCCCATTTTCTGAAAATCAGATCTGCTTGACGTTCA
CGTGGAAGGATGCTTTTGATAAAGGTTCCCTTTTTGGAGGGTCTGTAAAATTGGCTCTTGCAAGCTTAGG
ATATGAAAAGAGCTGTGTGTTGTTCAATTGTGCTGCCTTAGCTAGCCAGATTGCAGCAGAGCAGAACCTG
GATAATGATGAAGGATTGAAAACCGCTGCTAAGCAGTACCAGTTTGCTAGTGGTGCCTTTTTACATATTA
AAGACACAGTGTTATCTGCCTTAAGTCGAGAGCCTACTGTGGACATATCTCCAGATACTGTTGGAACTCT
CAGTCTTATTATGCTGGCTCAAGCTCAAGAAGTATTTTTCTTAAAAGCCACAAGAGATAAGATGAAAGAT
GCCATCATAGCTAAGCTGGCAAATCAGGCTGCGGATTACTTTGGCGATGCTTTCAAGCAGTGTCAGTACA
AGGACACGCTCCCCAAGGAGGTATTCCCCACCCTGGCTGCAAAGCAGTGCATCATGCAGGCCAATGCTGA
GTACCACCAGTCCATCCTGGCCAAGCAGCAGAAGAAGTTTGGGGAAGAGATCGCAAGGTTGCAGCACGCA
GCAGAACTGATCAAGAATGTGGCCTCTCGCTATGATGAGTATGTCAATGTGAAGGATTTTTCTGACAAAA
TCAACCGTGCCCTTACTGCAGCAAAGAAGGATAATGATTTTATTTATCATGACCGTGTTCCGGACCTTAA
GGATCTGGATCCTATCGGCAAAGCCACACTTGTGAAGCCCACCCCAGTCAATGTACCTGTCAGCCAGAAG
TTCACGGATTTGTTTGAGAAGATGGTCCCTGTGTCTGTGCAGCAGTCCCTGGCTGTGTTTAGTCAGAGGA
AAGCTGACTTGGTCAACAGATCAATCGCTCAGATGAGAGAAGCTACGACTTTGGCAAATGGAGTATTGGC
TTCCCTTAACCTTCCAGCAGCAATTGAAGATGTGTCTGGAGACACTGTACCTCAGTCTATACTTACCAAG
TCTACATCTGTAGTTGAACAGGGAGGCATCCAGACTGTCGACCAGCTGATAAAAGAGCTACCTGAGCTGC
TGCAAAGAAATAGAGAAATATTAGAGGAGTCGCTAAGATTGTTGGATGAAGAAGAAGCAACTGACAATGA
TTTAAGAGCAAAATTCAAGGACCGCTGGCAAAGGACTCCATCCAATGACCTGTACAAGCCTTTACGAGCA
GAGGGAGCCAAATTCAGAGCCGTTTTAGATAAAGCTGTGCAAGCGGATGGACAGGTGAAGGAGCGCTACC
AGTCCCATCGAGACACCATCGCACTTCTGTGTAAGCCGGAGCCAGAGCTGAATGCTGCCATCCCCTCTGC
TAACCCAGCAAAGACCATGCAGGGCAGCGAGGTTGTAAGTGTCTTAAAGTCCTTATTATCAAATCTTGAT
GAAATCAAGAAGGAAAGAGAGAGTCTTGAGAATGACCTGAAGTCAGTGAATTTTGACATGACAAGCAAGT
TTTTGACAGCTCTGGCCCAAGATGGCGTGATAAATGAGGAGGCTCTCTCTGTCACTGAGCTGGATCGGAT
CTATGGCGGTCTAACAAGTAAAGTTCAAGAGTCTCTGAAGAAACAAGAGGGACTTCTAAAAAATATACAG
GTCTCACACCAAGAATTCTCCAAAATGAAGCAATCTAACAACGAGGCTAACTTGAGAGAAGAAGTTCTGA
AGAACCTAGCAACTGCGTATGACAACTTTGTTGAGCTTGTAGCTAACTTGAAGGAGGGCACAAAGTTTTA
CAATGAGCTGACTGAGATCCTGGTCAGGTTCCAGAACAAATGCAGTGACATAGTGTTTGCACGGAAGACA
GAAAGAGACGAGCTCTTGAAGGATCTGCAGCAGAGCATTGCCAGAGAGCCCAGCGCTCCTTCAATCCCTC
CTCCAGCCTATCAGTCCTCCCCAGCAGCGGGGCATGCAGCAGCGCCTCCAACTCCAGCCCCAAGAACCAT
GCCGCCTGCTAAGCCCCAGCCTCCAGCCCGGCCTCCACCTCCTGTGCTTCCTGCAAACCGAGTTCCTCCT
GCTTCTGCTGCTGCTGCCCCTGCAGGCGTGGGGACGGCTTCAGCAGCGCCGCCACAGACCCCTGGCTCTG
CTCCCCCGCCACAGGCTCAGGGACCACCATACCCTACCTATCCAGGATATCCCGGGTATTGCCAAATGCC
CATGCCCATGGGCTACAACCCCTACGCATATGGCCAGTACAATATGCCGTACCCACCGGTGTATCACCAG
AGCCCCGGACAGGCTCCATACCCAGGACCCCAGCAGCCTACCTACCCCTTCCCTCAGCCCCCGCAGCAGT
CCTACTATCCACAGCAGTAA

Translation (869 aa):
MASFIWVQLKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKLRRSALGRPLDKHEGALETLLR
YYDQICSIEPKFPFSENQICLTFTWKDAFDKGSLFGGSVKLALASLGYEKSCVLFNCAALASQIAAEQNL
DNDEGLKTAAKQYQFASGAFLHIKDTVLSALSREPTVDISPDTVGTLSLIMLAQAQEVFFLKATRDKMKD
AIIAKLANQAADYFGDAFKQCQYKDTLPKEVFPTLAAKQCIMQANAEYHQSILAKQQKKFGEEIARLQHA
AELIKNVASRYDEYVNVKDFSDKINRALTAAKKDNDFIYHDRVPDLKDLDPIGKATLVKPTPVNVPVSQK
FTDLFEKMVPVSVQQSLAVFSQRKADLVNRSIAQMREATTLANGVLASLNLPAAIEDVSGDTVPQSILTK
STSVVEQGGIQTVDQLIKELPELLQRNREILEESLRLLDEEEATDNDLRAKFKDRWQRTPSNDLYKPLRA
EGAKFRAVLDKAVQADGQVKERYQSHRDTIALLCKPEPELNAAIPSANPAKTMQGSEVVSVLKSLLSNLD
EIKKERESLENDLKSVNFDMTSKFLTALAQDGVINEEALSVTELDRIYGGLTSKVQESLKKQEGLLKNIQ
VSHQEFSKMKQSNNEANLREEVLKNLATAYDNFVELVANLKEGTKFYNELTEILVRFQNKCSDIVFARKT
ERDELLKDLQQSIAREPSAPSIPPPAYQSSPAAGHAAAPPTPAPRTMPPAKPQPPARPPPPVLPANRVPP
ASAAAAPAGVGTASAAPPQTPGSAPPPQAQGPPYPTYPGYPGYCQMPMPMGYNPYAYGQYNMPYPPVYHQ
SPGQAPYPGPQQPTYPFPQPPQQSYYPQQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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