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Report for CCDS23582.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23582.1 Public Mus musculus 9 Ccrl2 23 108 98 CCDS HistoryNCBI Gene:54199Re-query CCDS DB by CCDS ID:23582.1Re-query CCDS DB by GeneID:54199See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23582.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111888.2 ENSMUSP00000107519.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111888.2Link to Ensembl Protein Viewer:ENSMUSP00000107519.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111888Re-query CCDS DB by Protein ID:ENSMUSP00000107519
Original member Current member EBI ENSMUST00000199839.4 ENSMUSP00000143116.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000199839.4Link to Ensembl Protein Viewer:ENSMUSP00000143116.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000199839Re-query CCDS DB by Protein ID:ENSMUSP00000143116
Original member Current member NCBI NM_001302376.1 NP_001289305.1 Accepted alive Link to Nucleotide Sequence:NM_001302376.1Link to Protein Sequence:NP_001289305.1Re-query CCDS DB by Nucleotide ID:NM_001302376Re-query CCDS DB by Protein ID:NP_001289305Link to BLAST:NP_001289305.1
Original member Current member NCBI NM_001302377.1 NP_001289306.1 Accepted alive Link to Nucleotide Sequence:NM_001302377.1Link to Protein Sequence:NP_001289306.1Re-query CCDS DB by Nucleotide ID:NM_001302377Re-query CCDS DB by Protein ID:NP_001289306Link to BLAST:NP_001289306.1
Original member Current member NCBI NM_017466.5 NP_059494.2 Accepted alive Link to Nucleotide Sequence:NM_017466.5Link to Protein Sequence:NP_059494.2Re-query CCDS DB by Nucleotide ID:NM_017466Re-query CCDS DB by Protein ID:NP_059494Link to BLAST:NP_059494.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001289305.1 360 O35457 360 100% 0 0
NP_001289306.1 360 O35457 360 100% 0 0
NP_059494.2 360 O35457 360 100% 0 0

Chromosomal Locations for CCDS 23582.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 111055346 111056428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1083 nt):
ATGGATAACTACACAGTGGCCCCGGACGATGAATATGATGTCCTAATCTTAGACGACTACCTGGACAACA
GTGGGCCGGACCAAGTTCCGGCCCCCGAGTTCCTCTCCCCCCAGCAGGTGCTGCAGTTCTGCTGCGCGGT
GTTTGCGGTGGGTCTCTTGGACAACGTGCTGGCGGTGTTTATCTTGGTGAAATACAAAGGACTCAAGAAT
CTGGGGAACATCTACTTCCTAAACCTGGCACTTTCAAACCTGTGTTTCCTGCTTCCCCTGCCGTTCTGGG
CCCATACTGCAGCACACGGGGAAAGCCCTGGCAATGGGACCTGTAAAGTTCTTGTCGGACTCCACTCCTC
GGGCTTATACAGCGAGGTGTTTTCCAACATCCTCCTCCTTGTGCAAGGATACAGGGTGTTTTCCCAAGGG
CGACTGGCCTCCATCTTCACGACAGTGTCTTGTGGTATTGTTGCGTGCATCCTGGCATGGGCCATGGCTA
CTGCGCTCTCTTTGCCCGAGTCTGTGTTTTATGAGCCTCGGATGGAAAGACAGAAACACAAGTGTGCCTT
TGGCAAACCTCACTTCTTGCCAATCGAAGCGCCGCTCTGGAAGTACGTTCTGACGTCAAAAATGATCATC
TTGGTACTTGCTTTTCCTCTGCTGGTTTTTATAATCTGCTGCAGGCAACTGAGGAGAAGGCAGAGCTTCA
GGGAGAGACAGTACGACCTCCACAAGCCGGCTCTTGTCATAACGGGCGTGTTCCTTTTGATGTGGGCGCC
TTACAACACTGTGCTTTTCCTGTCTGCTTTCCAGGAACACTTGTCCCTGCAGGATGAGAAGAGCAGCTAC
CACCTGGACGCAAGTGTTCAGGTCACACAGCTGGTAGCGACCACCCACTGCTGCGTCAACCCGCTGCTCT
ATTTGCTTCTTGACCGGAAGGCCTTTATGAGATACCTTCGCAGCCTGTTCCCACGGTGCAATGATATCCC
CTATCAAAGTAGTGGAGGCTATCAGCAAGCGCCTCCAAGGGAAGGTCATGGCAGGCCCATTGAACTGTAC
AGCAATTTGCATCAAAGGCAGGATATAATATAA

Translation (360 aa):
MDNYTVAPDDEYDVLILDDYLDNSGPDQVPAPEFLSPQQVLQFCCAVFAVGLLDNVLAVFILVKYKGLKN
LGNIYFLNLALSNLCFLLPLPFWAHTAAHGESPGNGTCKVLVGLHSSGLYSEVFSNILLLVQGYRVFSQG
RLASIFTTVSCGIVACILAWAMATALSLPESVFYEPRMERQKHKCAFGKPHFLPIEAPLWKYVLTSKMII
LVLAFPLLVFIICCRQLRRRQSFRERQYDLHKPALVITGVFLLMWAPYNTVLFLSAFQEHLSLQDEKSSY
HLDASVQVTQLVATTHCCVNPLLYLLLDRKAFMRYLRSLFPRCNDIPYQSSGGYQQAPPREGHGRPIELY
SNLHQRQDII


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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