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Report for CCDS23535.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23535.1 Public Mus musculus 9 Slc25a20 23 108 98 CCDS HistoryNCBI Gene:57279Re-query CCDS DB by CCDS ID:23535.1Re-query CCDS DB by GeneID:57279See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23535.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035222.5 ENSMUSP00000035222.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035222.5Link to Ensembl Protein Viewer:ENSMUSP00000035222.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000035222Re-query CCDS DB by Protein ID:ENSMUSP00000035222
Original member Current member NCBI NM_020520.5 NP_065266.1 Accepted alive Link to Nucleotide Sequence:NM_020520.5Link to Protein Sequence:NP_065266.1Re-query CCDS DB by Nucleotide ID:NM_020520Re-query CCDS DB by Protein ID:NP_065266Link to BLAST:NP_065266.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065266.1 301 Q9Z2Z6 301 100% 0 0

Chromosomal Locations for CCDS 23535.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 108662228 108662332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108669766 108669858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108672419 108672546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108677584 108677674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108680087 108680204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108681972 108682044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108682347 108682456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108683049 108683173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108683832 108683894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (906 nt):
ATGGCAGACGAGCCGAAACCCATCAGTCCGTTTAAGAACCTCCTGGCTGGCGGCTTCGGCGGCATGTGCC
TGGTGTTTGTGGGGCACCCCCTGGACACGGTCAAGGTCCGACTGCAGACACAACCACCAAGTTTGTCTGG
ACAGCCACCTATGTACTCTGGGACCTTGGACTGTTTCCGGAAGACTCTTATGAGAGAGGGCATCACAGGG
CTGTATCGGGGCATGGCTGCGCCCATCATTGGAGTCACCCCTATGTTCGCCGTGTGCTTCTTTGGGTTTG
GTCTGGGGAAGAAACTACAGCAGAAATCTCCAGAGGATGAACTTAGCTACCCACAGCTGTTTACAGCTGG
GATGTTATCTGGTGTGTTCACCACAGGAATCATGACCCCTGGAGAACGGATCAAATGCTTACTGCAGATT
CAGGCTTCTTCAGGGGAGAACAAGTACAGTGGCACCTTGGACTGCGCAAAGAAGCTGTATCAGGAGTTCG
GGATCCGCGGCTTCTACAAAGGGACTGTGCTCACACTCATGCGAGATGTTCCTGCCAGTGGGATGTATTT
CATGACATATGAATGGCTTAAAAATCTCTTCACTCCAGAGGGAAAGAGTGTCAGTGACCTCAGCGTGCCT
CGGATCCTGGTGGCTGGTGGCTTTGCAGGGATCTTCAACTGGGCCGTGGCAATCCCCCCGGACGTGCTCA
AGTCTCGATTCCAGACTGCACCTCCTGGAAAATATCCTAATGGTTTCAGAGATGTGTTGAGAGAGCTGAT
CCGAGAAGAAGGAGTCACCTCCTTGTACAAAGGGTTCAATGCAGTCATGATCCGCGCCTTCCCAGCCAAC
GCTGCCTGTTTCCTTGGCTTTGAAATTGCCATGAAGTTCCTTAATTGGATTGCCCCCAACTTGTGA

Translation (301 aa):
MADEPKPISPFKNLLAGGFGGMCLVFVGHPLDTVKVRLQTQPPSLSGQPPMYSGTLDCFRKTLMREGITG
LYRGMAAPIIGVTPMFAVCFFGFGLGKKLQQKSPEDELSYPQLFTAGMLSGVFTTGIMTPGERIKCLLQI
QASSGENKYSGTLDCAKKLYQEFGIRGFYKGTVLTLMRDVPASGMYFMTYEWLKNLFTPEGKSVSDLSVP
RILVAGGFAGIFNWAVAIPPDVLKSRFQTAPPGKYPNGFRDVLRELIREEGVTSLYKGFNAVMIRAFPAN
AACFLGFEIAMKFLNWIAPNL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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