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Report for CCDS23521.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23521.1 Public Mus musculus 9 Rhoa 23 108 98 CCDS HistoryNCBI Gene:11848Re-query CCDS DB by CCDS ID:23521.1Re-query CCDS DB by GeneID:11848See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23521.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000007959.13 ENSMUSP00000007959.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000007959.13Link to Ensembl Protein Viewer:ENSMUSP00000007959.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000007959Re-query CCDS DB by Protein ID:ENSMUSP00000007959
Original member Current member NCBI NM_001313961.1 NP_001300890.1 Accepted alive Link to Nucleotide Sequence:NM_001313961.1Link to Protein Sequence:NP_001300890.1Re-query CCDS DB by Nucleotide ID:NM_001313961Re-query CCDS DB by Protein ID:NP_001300890Link to BLAST:NP_001300890.1
Original member Current member NCBI NM_001313962.1 NP_001300891.1 Accepted alive Link to Nucleotide Sequence:NM_001313962.1Link to Protein Sequence:NP_001300891.1Re-query CCDS DB by Nucleotide ID:NM_001313962Re-query CCDS DB by Protein ID:NP_001300891Link to BLAST:NP_001300891.1
Original member Current member NCBI NM_016802.5 NP_058082.2 Accepted alive Link to Nucleotide Sequence:NM_016802.5Link to Protein Sequence:NP_058082.2Re-query CCDS DB by Nucleotide ID:NM_016802Re-query CCDS DB by Protein ID:NP_058082Link to BLAST:NP_058082.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001300890.1 193 Q9QUI0 193 100% 0 0
NP_001300891.1 193 Q9QUI0 193 100% 0 0
NP_058082.2 193 Q9QUI0 193 100% 0 0

Chromosomal Locations for CCDS 23521.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 108327586 108327741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108330871 108330991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108335051 108335181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108336648 108336821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (582 nt):
ATGGCTGCCATCAGGAAGAAACTGGTGATTGTTGGTGATGGAGCTTGTGGTAAGACATGCTTGCTCATAG
TCTTCAGCAAGGACCAGTTCCCAGAGGTCTATGTGCCCACGGTGTTTGAAAACTATGTGGCGGATATCGA
GGTGGATGGGAAGCAGGTAGAGTTGGCTTTATGGGACACAGCTGGACAGGAAGATTATGACCGCCTGCGG
CCTCTCTCTTATCCAGACACCGATGTTATATTGATGTGTTTTTCCATTGACAGCCCTGATAGTTTAGAAA
ACATCCCAGAAAAATGGACTCCAGAAGTCAAGCATTTCTGTCCAAATGTGCCCATCATCCTGGTTGGGAA
CAAGAAGGACCTTCGGAATGACGAGCACACGAGACGGGAGTTGGCCAAAATGAAGCAGGAGCCGGTAAAA
CCTGAAGAAGGCAGAGATATGGCAAACAGGATTGGCGCTTTTGGGTACATGGAGTGTTCAGCAAAGACCA
AAGATGGAGTGAGAGAGGTTTTTGAGATGGCCACGAGAGCTGCTCTGCAAGCTAGACGTGGGAAGAAAAA
GTCTGGGTGCCTCATCTTGTGA

Translation (193 aa):
MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR
PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVK
PEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRGKKKSGCLIL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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