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Report for CCDS23511.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23511.1 Public Mus musculus 9 Traip 23 108 98 CCDS HistoryNCBI Gene:22036Re-query CCDS DB by CCDS ID:23511.1Re-query CCDS DB by GeneID:22036See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23511.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049348.8 ENSMUSP00000040001.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049348.8Link to Ensembl Protein Viewer:ENSMUSP00000040001.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000049348Re-query CCDS DB by Protein ID:ENSMUSP00000040001
Original member NCBI NM_011634.3 NP_035764.2 Updated not alive Link to Nucleotide Sequence:NM_011634.3Link to Protein Sequence:NP_035764.2Re-query CCDS DB by Nucleotide ID:NM_011634Re-query CCDS DB by Protein ID:NP_035764
Current member NCBI NM_011634.4 NP_035764.2 Accepted alive Link to Nucleotide Sequence:NM_011634.4Link to Protein Sequence:NP_035764.2Re-query CCDS DB by Nucleotide ID:NM_011634Re-query CCDS DB by Protein ID:NP_035764Link to BLAST:NP_035764.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035764.2 470 Q8VIG6-1 470 100% 0 0

Chromosomal Locations for CCDS 23511.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 107951075 107951172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107955865 107955922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107956346 107956429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107958816 107958855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107959439 107959566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107960978 107961072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107961542 107961655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107962254 107962341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107962831 107962920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107963329 107963417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107968594 107968749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107970004 107970052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107970469 107970618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107970708 107970758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107970974 107971096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1413 nt):
ATGCCTATCCGCGCTCTGTGCACTATCTGCTCCGACTTCTTCGATCACTCCCGTGACGTGGCTGCCATCC
ACTGTGGCCACACTTTTCATCTGCAATGCCTAATCCAGTGGTTTGAGACAGCACCAAGTCGGACCTGCCC
ACAGTGTAGAATCCAGGTTGGCAAAAAGACTATTATAAACAAACTTTTCTTTGACCTCGCCCAGGAAGAG
GAGAATGTCTTGGATGCAGAATTCTTAAAGAATGAACTGGACAGCGTCAAAGCTCAGCTTTCCCAGAAAG
ACAGGGAGAAACGGGACAGCCAGGCCATTATCGACACTCTACGGGACACCCTGGAAGAACGCAATGCTAC
CGTGGAGTCCCTACAGAACGCCTTAAACAAGGCAGAGATGCTGTGTTCCACCCTGAAAAAACAGATGAAG
TTCCTGGAGCAGCGGCAGGATGAGACCAAACAAGCTCGGGAGGAGGCCCACCGACTCAAGTGCAAGATGA
AAACCATGGAGCAAATTGAGCTCCTACTCCAGAGCCAGCGGTCTGAGGTGGAGGAGATGATTCGAGACAT
GGGTGTGGGACAGTCAGCGGTGGAGCAGCTGGCTGTGTACTGCGTGTCCCTCAAGAAAGAGTATGAGAAT
CTGAAGGAAGCTCGGAAGGCCACAGGGGAACTGGCTGACAGGTTGAAGAAGGATTTGGTGTCCTCTAGGA
GCAAGTTGAAGACTCTCAACACTGAGCTGGATCAGGCCAAGTTAGAACTGAGGTCAGCCCAGAAGGACTT
ACAAAGTGCTGACCAGGAGATCACGAGCCTAAGAAAGAAGCTGATGATCCTCCAGGGAACCTTGAGCCTG
CCTCCGGCGACCAATGAGACGGTCAGCCGCCTGGTTTTTGAGAGCCCAGCCCCTGTGGAGATGATGAACC
CGAGGCTTCACCAGCCACCCTTCGGTGATGAGATTGATCTCAATACCACCTTTGATGTAAATACCCCTCC
AACCCAGACCTCTGGCTCCCAGCATTGCCTCCCCAAGAAGCTGTGCCTGGAGAGGGCACGCTCTCCCATG
CAGAATGTCCTCAAGAAGGTGCACAAAGTCTCCAAGCCGGAGTCCCAGCTCTCACTGGGTGGCCAGCGAT
GTGTAGGAGAGCTAGATGAGGAACTGGCTGGTGCCTTCCCTCTCTTCATCCGGAATGCTGTCCTGGGTCA
GAAACAGCCCAACAGGACCACAGCAGAATCCCGTTGCAGCACAGATGTGGTAAGAATAGGCTTTGATGGG
CTTGGAGGACGAACAAAATTCATCCAGCCTAGGGACACAACCATTATCCGACCAGTGCCTGTTAAGTCCA
AGGCCAAGAGTAAACAGAAAGTGAGAATAAAGACTGTGAGTTCTGCCTCCCAGCCCAAGCTGGATACCTT
CTTATGTCAGTGA

Translation (470 aa):
MPIRALCTICSDFFDHSRDVAAIHCGHTFHLQCLIQWFETAPSRTCPQCRIQVGKKTIINKLFFDLAQEE
ENVLDAEFLKNELDSVKAQLSQKDREKRDSQAIIDTLRDTLEERNATVESLQNALNKAEMLCSTLKKQMK
FLEQRQDETKQAREEAHRLKCKMKTMEQIELLLQSQRSEVEEMIRDMGVGQSAVEQLAVYCVSLKKEYEN
LKEARKATGELADRLKKDLVSSRSKLKTLNTELDQAKLELRSAQKDLQSADQEITSLRKKLMILQGTLSL
PPATNETVSRLVFESPAPVEMMNPRLHQPPFGDEIDLNTTFDVNTPPTQTSGSQHCLPKKLCLERARSPM
QNVLKKVHKVSKPESQLSLGGQRCVGELDEELAGAFPLFIRNAVLGQKQPNRTTAESRCSTDVVRIGFDG
LGGRTKFIQPRDTTIIRPVPVKSKAKSKQKVRIKTVSSASQPKLDTFLCQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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