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Report for CCDS23505.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23505.1 Public Mus musculus 9 Sema3f 23 108 98 CCDS HistoryNCBI Gene:20350Re-query CCDS DB by CCDS ID:23505.1Re-query CCDS DB by GeneID:20350See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23505.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000080560.8 ENSMUSP00000079400.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080560.8Link to Ensembl Protein Viewer:ENSMUSP00000079400.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000080560Re-query CCDS DB by Protein ID:ENSMUSP00000079400
Original member NCBI NM_011349.3 NP_035479.2 Updated not alive Link to Nucleotide Sequence:NM_011349.3Link to Protein Sequence:NP_035479.2Re-query CCDS DB by Nucleotide ID:NM_011349Re-query CCDS DB by Protein ID:NP_035479
Current member NCBI NM_011349.4 NP_035479.2 Accepted alive Link to Nucleotide Sequence:NM_011349.4Link to Protein Sequence:NP_035479.2Re-query CCDS DB by Nucleotide ID:NM_011349Re-query CCDS DB by Protein ID:NP_035479Link to BLAST:NP_035479.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035479.2 754 O88632-2 754 100% 0 0

Chromosomal Locations for CCDS 23505.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 107682429 107682839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107683560 107683693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107683973 107684040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107684222 107684379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107684550 107684591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107684688 107684776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107685325 107685547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107687190 107687334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107687490 107687559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107687730 107687844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107687949 107688088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107688230 107688349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107689686 107689779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107692168 107692287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107692389 107692451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107692556 107692716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107705431 107705542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2265 nt):
ATGCTTGTCACTGCCTTCATCCTCTGGGCTTCCCTGCTGACCGGGGCCTGGCCTGCTACCCCTATCCAGG
ACCAGCTTCCAGCCACACCTAGAGTCCGACTGTCATTCAAAGAACTTAAGGCCACCGGTACCGCCCACTT
CTTCAACTTTCTGCTCAACACTACAGACTACAGAATCCTGCTCAAGGATGAGGACCATGACCGCATGTAT
GTGGGCAGCAAGGACTACGTGCTGTCCCTGGACCTGCATGACATCAACCGAGAGCCCCTTATTATCCATT
GGGCAGCCTCCCCGCAGCGCATTGAGGAGTGCATACTGTCAGGCAAGGATGGCAATGGAGAGTGTGGTAA
CTTCGTCCGGCTCATCCAGCCTTGGAACCGAACACACCTGTATGTGTGTGGGACCGGTGCCTACAACCCC
ATGTGCACCTATGTGAACCGTGGCCGTCGCGCACAGGATTACATCTTCTACCTGGAGCCTGAGAAACTGG
AGTCAGGAAAAGGCAAATGTCCCTATGACCCCAAGCTGGACACAGCCTCAGCCCTCATCAATGAGGAACT
CTATGCAGGAGTGTACATCGATTTTATGGGTACCGATGCAGCCATTTTCCGCACGCTGGGGAAGCAGACA
GCCATGCGCACAGATCAGTACAACTCCCGGTGGCTCAATGATCCTTCCTTCATACATGCTGAGCTCATCC
CTGACAGTGCAGAGCGCAATGACGATAAACTCTACTTCTTCTTCCGAGAGCGCTCGGCAGAGGCGCCACA
GAACCCTGCTGTGTATGCCCGCATCGGGCGCATCTGCCTCAACGATGACGGTGGCCATTGCTGCCTGGTC
AACAAGTGGAGCACATTCCTGAAGGCTCGGCTCGTCTGCTCCGTGCCAGGCGAGGATGGTATTGAGACCC
ACTTCGACGAACTCCAGGATGTGTTTGTCCAGCAGACCCAGGACGTCAGGAACCCAGTCATTTATGCTGT
CTTTACCTCTTCAGGCTCTGTGTTCCGAGGGTCTGCAGTGTGTGTCTACTCCATGGCTGATATCCGCATG
GTCTTCAATGGGCCTTTTGCTCACAAGGAGGGCCCCAACTATCAATGGATGCCCTTCTCAGGAAAGATGC
CCTATCCTCGGCCTGGCACATGCCCTGGTGGAACCTTCACGCCCTCGATGAAGTCCACTAAGGACTACCC
TGATGAAGTGATCAACTTCATGCGCACTCATCCGCTCATGTACCAGGCCGTCTACCCGCTCCAGCGGCGA
CCCCTGGTGGTCCGTACAGGCGCTCCCTACCGCCTCACCACTGTCGCTGTGGACCAGGTGGATGCAGCTG
ATGGACGCTATGAGGTGCTTTTCCTGGGCACAGACCGCGGGACAGTGCAGAAGGTCATCGTGCTGCCCAA
GGACGACCAGGAGGTGGAAGAGCTGATGCTAGAGGAAGTGGAGGTCTTCAAGGAACCAGCACCTGTTAAG
ACCATGACCATCTCTTCCAAGAGGCAACAACTGTATGTGGCCTCAGCCGTGGGTGTCACACACCTGAGCC
TGCACCGCTGCCAGGCCTATGGAGCTGCCTGTGCCGACTGCTGCCTTGCCCGCGATCCCTACTGTGCCTG
GGATGGCCAGGCCTGCTCTCGCTACACAGCATCCTCCAAGAGGCGGAGTCGCCGGCAAGATGTCCGCCAC
GGGAACCCTATCAGACAGTGCCGTGGTTTCAATTCCAATGCAAACAAGAATGCCGTAGAGTCTGTGCAGT
ACGGAGTGGCCGGCAGCGCAGCTTTCCTTGAGTGTCAGCCCCGCTCACCTCAAGCCACTGTCAAGTGGCT
GTTCCAGCGAGATCCCAGTGATCGGCGCCGTGAGATTCGCGCAGAGGACCGCTTCCTGCGTACAGAGCAG
GGGCTGTTGCTTCGCGCCCTGCAGCTTGGTGACCGCGGCCTCTACTCCTGCACGGCCACTGAGAACAACT
TCAAGCACATCGTCACGCGGGTGCAGCTGCATGTACTGGGCCGGGATGCCGTCCATGCTGCCCTCTTCCC
CCCACTGGCTGTGAGCGTCCCTCCACCTCCTGGCACAGGCCCTCCAACGCCTCCTTACCAGGAGCTGGCC
CAGCTCCTAGCCCAGCCGGAAGTGGGCCTCATCCATCAGTACTGCCAGGGTTACTGGCGCCACGTGCCCC
CCAGACCCAGGGAGGCGCCAGGAGCACTTAGGCCTCCTGAACTCCAGGACCAGAAAAAGCCGAGGAACCG
CCGCCACCACCCTCCGGACACATGA

Translation (754 aa):
MLVTAFILWASLLTGAWPATPIQDQLPATPRVRLSFKELKATGTAHFFNFLLNTTDYRILLKDEDHDRMY
VGSKDYVLSLDLHDINREPLIIHWAASPQRIEECILSGKDGNGECGNFVRLIQPWNRTHLYVCGTGAYNP
MCTYVNRGRRAQDYIFYLEPEKLESGKGKCPYDPKLDTASALINEELYAGVYIDFMGTDAAIFRTLGKQT
AMRTDQYNSRWLNDPSFIHAELIPDSAERNDDKLYFFFRERSAEAPQNPAVYARIGRICLNDDGGHCCLV
NKWSTFLKARLVCSVPGEDGIETHFDELQDVFVQQTQDVRNPVIYAVFTSSGSVFRGSAVCVYSMADIRM
VFNGPFAHKEGPNYQWMPFSGKMPYPRPGTCPGGTFTPSMKSTKDYPDEVINFMRTHPLMYQAVYPLQRR
PLVVRTGAPYRLTTVAVDQVDAADGRYEVLFLGTDRGTVQKVIVLPKDDQEVEELMLEEVEVFKEPAPVK
TMTISSKRQQLYVASAVGVTHLSLHRCQAYGAACADCCLARDPYCAWDGQACSRYTASSKRRSRRQDVRH
GNPIRQCRGFNSNANKNAVESVQYGVAGSAAFLECQPRSPQATVKWLFQRDPSDRRREIRAEDRFLRTEQ
GLLLRALQLGDRGLYSCTATENNFKHIVTRVQLHVLGRDAVHAALFPPLAVSVPPPPGTGPPTPPYQELA
QLLAQPEVGLIHQYCQGYWRHVPPRPREAPGALRPPELQDQKKPRNRRHHPPDT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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