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Report for CCDS23473.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23473.1 Public Mus musculus 9 Twf2 23 108 98 CCDS HistoryNCBI Gene:23999Re-query CCDS DB by CCDS ID:23473.1Re-query CCDS DB by GeneID:23999See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 23473.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024047.11 ENSMUSP00000024047.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024047.11Link to Ensembl Protein Viewer:ENSMUSP00000024047.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000024047Re-query CCDS DB by Protein ID:ENSMUSP00000024047
Original member Current member NCBI NM_011876.3 NP_036006.1 Accepted alive Link to Nucleotide Sequence:NM_011876.3Link to Protein Sequence:NP_036006.1Re-query CCDS DB by Nucleotide ID:NM_011876Re-query CCDS DB by Protein ID:NP_036006Link to BLAST:NP_036006.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036006.1 349 Q9Z0P5-1 349 100% 0 0

Chromosomal Locations for CCDS 23473.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 106203260 106203284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106206889 106206966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106211719 106211897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106212256 106212351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106212732 106212836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106212938 106213063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106214101 106214251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106214356 106214477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106214828 106214995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1050 nt):
ATGGCGCACCAGACCGGCATCCACGCCACTGAAGAGCTAAAGGAATTCTTTGCCAAGGCCCGGGCTGGCT
CCATCCGACTTATCAAAGTCATCATTGAGGACGAACAGCTCGTGCTGGGTGCCTCACAGGAGCCAGTGGG
ACGCTGGGACCAGGACTACGACCGGGCTGTGCTGCCACTGCTAGACGCCCAAGAGCCCTGCTACCTCCTC
TTCCGACTTGATTCGCAGAATGCTCAGGGTTTCGAGTGGCTTTTCCTGGCCTGGTCACCTGACAATTCGC
CGGTGCGGCTGAAGATGCTATATGCAGCCACACGCGCCACCGTGAAGAAGGAGTTTGGAGGCGGCCACAT
CAAGGATGAGCTCTTCGGGACAGTAAAGGATGACCTCTCCTTGGCTGGGTACCAGAAGCACCTGTCATCG
TGTGCCGCACCTGCCCCACTGACTTCTGCCGAGAGAGAACTCCAGCAGATCCGAATCAATGAGGTGAAGA
CTGAGATCAGCGTGGAAAGTAAACACCAGACGCTGCAGGGCCTGGCCTTCCCTCTGCAGCCTGAGGCCCA
GAGGGCACTTCAGCAACTCAAACAGAAGACGGTCAACTATATCCAGCTGAAGCTGGACCTGGAACGGGAG
ACCATCGAGCTGGTACACACAGAACCCACAAATGTGGCCCAGCTGCCCTCACGGATTCCTCGAGATGCTG
CCCGCTACCACTTCTTCCTATACAAGCATACTCATGAGGGTGATGCCCTTGAATCTGTGGTGTTCATCTA
CTCCATGCCCGGGTACAAGTGCAGCATCAAGGAGCGGATGCTCTACTCCAGCTGCAAGAGCCGCCTCCTT
GACTCCGTAGAGCAAGACTTCCAGCTGGAGATAGCTAAGAAGATTGAGATCGGCGATGGAGCAGAGCTGA
CAGCTGAGTTCCTCTATGACGAGGTACATCCCAAGCAACACGCGTTCAAGCAGGCGTTCGCCAAGCCCAA
AGGCCCCGGGGGCAAGCGGGGCCACAAGCGCCTCATCCGGGGCCCCGGGGAGAACGGGGAAGACAGCTAG

Translation (349 aa):
MAHQTGIHATEELKEFFAKARAGSIRLIKVIIEDEQLVLGASQEPVGRWDQDYDRAVLPLLDAQEPCYLL
FRLDSQNAQGFEWLFLAWSPDNSPVRLKMLYAATRATVKKEFGGGHIKDELFGTVKDDLSLAGYQKHLSS
CAAPAPLTSAERELQQIRINEVKTEISVESKHQTLQGLAFPLQPEAQRALQQLKQKTVNYIQLKLDLERE
TIELVHTEPTNVAQLPSRIPRDAARYHFFLYKHTHEGDALESVVFIYSMPGYKCSIKERMLYSSCKSRLL
DSVEQDFQLEIAKKIEIGDGAELTAEFLYDEVHPKQHAFKQAFAKPKGPGGKRGHKRLIRGPGENGEDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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