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Report for CCDS23329.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23329.1 Public Mus musculus 9 Tcf12 23 108 98 CCDS HistoryNCBI Gene:21406Re-query CCDS DB by CCDS ID:23329.1Re-query CCDS DB by GeneID:21406See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23329.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000184783.7 ENSMUSP00000139364.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000184783.7Link to Ensembl Protein Viewer:ENSMUSP00000139364.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000184783Re-query CCDS DB by Protein ID:ENSMUSP00000139364
Original member Current member EBI ENSMUST00000183404.7 ENSMUSP00000139365.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000183404.7Link to Ensembl Protein Viewer:ENSMUSP00000139365.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000183404Re-query CCDS DB by Protein ID:ENSMUSP00000139365
Original member Current member NCBI NM_011544.3 NP_035674.2 Accepted alive Link to Nucleotide Sequence:NM_011544.3Link to Protein Sequence:NP_035674.2Re-query CCDS DB by Nucleotide ID:NM_011544Re-query CCDS DB by Protein ID:NP_035674Link to BLAST:NP_035674.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035674.2 706 Q61286-1 706 100% 0 0

Chromosomal Locations for CCDS 23329.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 71849783 71849925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 71856305 71856537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 71858484 71858646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 71858840 71858954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 71868072 71868278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 71868999 71869070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 71870074 71870147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 71875989 71876067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 71882717 71882781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 71883107 71883251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 71883656 71883795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 71885183 71885288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 71917005 71917057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 71922652 71922787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 71943954 71944018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72000416 72000518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72015638 72015711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72109676 72109748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72110738 72110812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2121 nt):
ATGAATCCCCAGCAGCAGCGCATGGCCGCGATAGGGACCGACAAGGAGCTGAGCGACCTGCTGGACTTCA
GTGCGATGTTTTCTCCACCTGTTAATAGTGGGAAAACGAGACCAACAACACTGGGAAGTAGTCAGTTCAG
CGGGTCAGGTATGGATGAGCGTGGAGGAACAACATCTTGGGGAACAAGTGGTCAACCAAGCCCCTCCTAT
GATTCATCTAGAGGTTTTACAGACAGCCCTCATTACAGTGATCACTTGAATGACAGTCGATTAGGAACCC
ACGAAGGCTTGTCCCCAACACCTTTCATGAACTCAAATCTGATAGGGAAAACATCAGAGAGAGGCTCATT
TTCCCTGTACAGCAGAGACTCTGGACTCTCAGGCTGTCAGTCTAGTCTCCTGAGACAAGATCTAGGACTT
GGGAGCCCGGCACAGCTGTCTTCTTCAGGAAAGCCTGGAACACCATACTACTCATTCTCTGCCACAAGTT
CGAGAAGAAGACCGCTCCATGATTCTGTAGCCCTAGATCCTTTACAAGCGAAGAAAGTAAGAAAGGTGCC
TCCTGGCCTACCTTCTTCTGTATATGCACCATCCCCAAATTCTGACGATTTCAACCGTGAATCTCCTAGT
TACCCATCTCCCAAGCCACCAACCAGTATGTTCGCTAGCACTTTCTTTATGCAAGATGGGACCCACAGTT
CTTCTGACCTTTGGAGTTCATCGAATGGGATGAGCCAGCCTGGTTTTGGTGGAATTCTGGGGACCTCCAC
ATCCCACATGTCTCAGTCCAGTAGTTATGGCAGCCTTCATTCACATGACCGCTTGAGTTATCCTCCACAC
TCAGTGTCACCAACAGACATAAACACAAGTCTTCCGCCAATGTCCAGCTTCCACCGTGGTAGTACCAGCA
GCTCACCATATGTTGCCGCCTCACATACTCCTCCCATCAATGGATCAGATAGCATCCTAGGAACCAGAGG
GAATGCTGCTGGAAGCTCACAGACGGGTGATGCACTTGGGAAGGCCTTGGCATCTATTTATTCCCCTGAC
CACACAAGCAGTAGTTTTCCATCAAACCCATCAACACCAGTGGGATCTCCTTCACCTCTCACAGGTACCA
GTCAGTGGCCCAGAGCTGGAGGGCAAGCTCCTTCATCTCCAAGCTATGAAAACTCACTTCACTCCCTGAA
AAATCGAGTTGAGCAGCAACTTCACGAGCATTTGCAAGATGCAATGTCCTTCTTAAAGGATGTCTGTGAG
CAGTCTCGAATGGAAGACCGCTTAGACAGGCTGGATGATGCTATCCATGTGCTACGAAACCATGCAGTTG
GACCTTCTACCAGTCTGCCTACTAGCCACAGTGACATACACAGTTTGCTGGGACCATCCCATAATGCATC
AATTGGAAACCTCAATTCAAACTATGGAGGATCCAGCCTTGTTACAAATAGTCGATCAGCTTCGATGGTC
GGAACACATCGGGAAGATTCAGTCAGTCTCAATGGCAATCATTCGGTCCTGTCTAGTACTGTTGCTGCCT
CAAACACAGAACTGAACCATAAAACACCAGAAAATTTCAGAGGTGGTGTACAAAATCAGTCTGGAAGTGT
TGTTCCAACAGAAATCAAGACTGAAAACAAAGAAAAAGATGAAAACCTTCATGAACCTCCTTCATCAGAT
GACATGAAATCAGATGATGAGTCCTCCCAGAAAGACATCAAGGTCTCATCTAGGGGCAGAACAAGCAGTA
CCAATGAAGACGAGGATCTGAATCCAGAACAGAAAATCGAAAGGGAGAAGGAAAGGCGGATGGCTAACAA
TGCCAGAGAGCGCCTGCGCGTGCGGGATATTAACGAGGCGTTCAAGGAGCTTGGCCGAATGTGTCAGCTT
CATTTGAAGAGTGAAAAACCTCAGACAAAACTTCTCATTCTTCATCAGGCCGTGGCAGTCATCCTTAGTC
TAGAACAGCAAGTGAGAGAGAGGAACCTCAACCCCAAAGCAGCCTGCCTTAAGAGAAGAGAAGAAGAAAA
AGTCTCTGCTGCGTCAGCAGAGCCGCCCAACACGTTGCCAGGAGCCCATCCTGGGCTTAGTGAGTCTACC
AACCCTATGGGTCATCTGTAA

Translation (706 aa):
MNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTRPTTLGSSQFSGSGMDERGGTTSWGTSGQPSPSY
DSSRGFTDSPHYSDHLNDSRLGTHEGLSPTPFMNSNLIGKTSERGSFSLYSRDSGLSGCQSSLLRQDLGL
GSPAQLSSSGKPGTPYYSFSATSSRRRPLHDSVALDPLQAKKVRKVPPGLPSSVYAPSPNSDDFNRESPS
YPSPKPPTSMFASTFFMQDGTHSSSDLWSSSNGMSQPGFGGILGTSTSHMSQSSSYGSLHSHDRLSYPPH
SVSPTDINTSLPPMSSFHRGSTSSSPYVAASHTPPINGSDSILGTRGNAAGSSQTGDALGKALASIYSPD
HTSSSFPSNPSTPVGSPSPLTGTSQWPRAGGQAPSSPSYENSLHSLKNRVEQQLHEHLQDAMSFLKDVCE
QSRMEDRLDRLDDAIHVLRNHAVGPSTSLPTSHSDIHSLLGPSHNASIGNLNSNYGGSSLVTNSRSASMV
GTHREDSVSLNGNHSVLSSTVAASNTELNHKTPENFRGGVQNQSGSVVPTEIKTENKEKDENLHEPPSSD
DMKSDDESSQKDIKVSSRGRTSSTNEDEDLNPEQKIEREKERRMANNARERLRVRDINEAFKELGRMCQL
HLKSEKPQTKLLILHQAVAVILSLEQQVRERNLNPKAACLKRREEEKVSAASAEPPNTLPGAHPGLSEST
NPMGHL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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