NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS23319.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23319.1 Public Mus musculus 9 Bnip2 23 108 98 CCDS HistoryNCBI Gene:12175Re-query CCDS DB by CCDS ID:23319.1Re-query CCDS DB by GeneID:12175See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23319.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034754.11 ENSMUSP00000034754.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034754.11Link to Ensembl Protein Viewer:ENSMUSP00000034754.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000034754Re-query CCDS DB by Protein ID:ENSMUSP00000034754
Original member Current member NCBI NM_016787.4 NP_058067.2 Accepted alive Link to Nucleotide Sequence:NM_016787.4Link to Protein Sequence:NP_058067.2Re-query CCDS DB by Nucleotide ID:NM_016787Re-query CCDS DB by Protein ID:NP_058067Link to BLAST:NP_058067.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058067.2 326 O54940 326 100% 0 0

Chromosomal Locations for CCDS 23319.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 69995478 69995527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 69996118 69996185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 69997081 69997257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 69999094 69999270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70000843 70000945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70001980 70002111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70003379 70003465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70003569 70003667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70004306 70004341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70007064 70007115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (981 nt):
ATGGAAGGTGTGGAGCTGAAGGAAGAATGGCAGGATGAAGATTTTCCAATACCTTTACCAGAAGATGACA
GCATTGAAGCAGATACACTAGATGGAACTGATCCAGACAGACAGCCTGGCTCCTTAGAAGTTAATGGGAA
CAAAGTAAGGAAGAAACTGATGGCCCCAGACATCAGCCTGACCCTGGATCCTGGTGAAGACTCTCTGTGG
TCCGATGATTTGGATGAAGCTGGAGAGGTTGACCTGGAAGGCTTAGACACCCCATCAGAGAACAGTGATG
AGTTTGAGTGGGAAGATGATCTTCCCAAACCCAAAACTACTGAAGTCATTAGGAAAGGCTCGATTACTGA
GTACACAGCCACAGAAGAAAAGGGCGATGGACGCCGCTGGCGCATGTTCAGGATTGGAGAGCAGGACCAC
AGGGTGGACATGAAGGCGATCGAGCCCTACAAAAAAGTTATTAGCCATGGAGGATATTATGGGGACGGCT
TAAATGCCATTGTTGTATTTGCTGTCTGTTTCATGCCTGAGAGTGGTCAGCCTAACTATAGATATTTGAT
GGACAATCTCTTTAAATATGTTATTGGCACTTTAGAGCTGTTGGTAGCAGAGAACTACATGATCATTTAC
TTAAATGGTGCGACAACTCGAAGAAAAATGCCCAGTTTGGGATGGCTCAGGAGATGCTACCAGCAAATTG
ATAGACGATTAAGGAAAAACCTTAAGTCTCTAATCATTGTGCACCCCTCTTGGTTTATCCGAACACTTCT
GGCTGTTACACGACCATTTATCAGTTCAAAGTTCAGTCAGAAGATCAGATACGTCTTTAACTTGGCCGAG
CTGGCAGAGCTTGTTCCCATGGAGTATGTCGGCATACCAGAGTGCATCAAACAGTATGAAGAAGAAAAGT
TTAAAAAGAGACAAAAAAGAGTTGATCAAGAGCTTAATGGAAAACAAGAACCACCAAAAAGTGAGCAGTA
A

Translation (326 aa):
MEGVELKEEWQDEDFPIPLPEDDSIEADTLDGTDPDRQPGSLEVNGNKVRKKLMAPDISLTLDPGEDSLW
SDDLDEAGEVDLEGLDTPSENSDEFEWEDDLPKPKTTEVIRKGSITEYTATEEKGDGRRWRMFRIGEQDH
RVDMKAIEPYKKVISHGGYYGDGLNAIVVFAVCFMPESGQPNYRYLMDNLFKYVIGTLELLVAENYMIIY
LNGATTRRKMPSLGWLRRCYQQIDRRLRKNLKSLIIVHPSWFIRTLLAVTRPFISSKFSQKIRYVFNLAE
LAELVPMEYVGIPECIKQYEEEKFKKRQKRVDQELNGKQEPPKSEQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH