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Report for CCDS233.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
233.1 Public Homo sapiens 1 ZNF436 24 110 108 CCDS HistoryNCBI Gene:80818Re-query CCDS DB by CCDS ID:233.1Re-query CCDS DB by GeneID:80818See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 233.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000314011.9 ENSP00000313582.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000314011.9Link to Ensembl Protein Viewer:ENSP00000313582.4Re-query CCDS DB by Nucleotide ID:ENST00000314011Re-query CCDS DB by Protein ID:ENSP00000313582
Original member Current member EBI ENST00000374608.3 ENSP00000363736.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000374608.3Link to Ensembl Protein Viewer:ENSP00000363736.3Re-query CCDS DB by Nucleotide ID:ENST00000374608Re-query CCDS DB by Protein ID:ENSP00000363736
Original member Current member NCBI NM_001077195.2 NP_001070663.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001077195.2Link to Protein Sequence:NP_001070663.1Re-query CCDS DB by Nucleotide ID:NM_001077195Re-query CCDS DB by Protein ID:NP_001070663Link to BLAST:NP_001070663.1
Original member Current member NCBI NM_030634.3 NP_085137.1 Accepted alive Link to Nucleotide Sequence:NM_030634.3Link to Protein Sequence:NP_085137.1Re-query CCDS DB by Nucleotide ID:NM_030634Re-query CCDS DB by Protein ID:NP_085137Link to BLAST:NP_085137.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001070663.1 470 Q9C0F3 470 100% 0 0
NP_085137.1 470 Q9C0F3 470 100% 0 0

Chromosomal Locations for CCDS 233.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 23361969 23363221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 23367042 23367168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 23367973 23368005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1413 nt):
ATGGCAGCCACCCTGCTCATGGCTGGGTCCCAGGCACCTGTGACGTTTGAAGATATGGCCATGTATCTCA
CCCGGGAAGAATGGAGACCTCTGGACGCTGCACAGAGGGACCTTTACCGGGATGTTATGCAGGAGAATTA
TGGAAATGTTGTCTCACTAGATTTTGAGATCAGGAGTGAGAACGAGGTAAATCCCAAGCAAGAGATTAGT
GAAGATGTACAATTTGGGACTACATCTGAAAGACCTGCTGAGAATGCTGAGGAAAATCCTGAAAGTGAAG
AGGGCTTTGAAAGCGGAGATAGGTCAGAAAGACAATGGGGAGATTTAACAGCAGAAGAGTGGGTAAGCTA
TCCTCTCCAACCAGTCACTGATCTACTTGTCCACAAAGAAGTCCACACAGGCATCCGCTATCATATATGT
TCTCATTGTGGAAAGGCCTTCAGTCAGATCTCAGACCTTAATCGACATCAGAAGACCCACACTGGAGACA
GACCCTATAAATGTTATGAATGTGGAAAAGGCTTCAGTCGCAGCTCACACCTTATTCAGCATCAAAGAAC
ACATACTGGGGAGAGGCCTTATGACTGTAACGAGTGTGGGAAAAGTTTTGGAAGAAGTTCTCACCTGATT
CAGCATCAGACAATCCACACTGGAGAGAAGCCTCACAAATGTAATGAGTGTGGAAAAAGTTTCTGCCGTC
TCTCTCACCTAATCCAACACCAAAGGACCCACAGTGGTGAGAAACCCTATGAGTGTGAGGAGTGTGGGAA
AAGCTTCAGCCGGAGCTCTCACCTAGCTCAGCACCAGAGGACCCACACGGGTGAGAAACCTTATGAATGT
AACGAATGTGGCCGAGGCTTCAGTGAGAGATCTGATCTCATCAAACACTATCGAGTCCACACAGGGGAGA
GGCCCTACAAGTGTGATGAGTGTGGGAAGAATTTCAGTCAGAACTCCGACCTTGTGCGTCATCGCAGAGC
CCACACGGGAGAGAAGCCATACCACTGTAACGAATGTGGGGAAAATTTCAGCCGCATCTCACACTTGGTT
CAGCACCAGAGAACTCACACTGGAGAGAAGCCATATGAATGCAATGCTTGTGGGAAAAGCTTCAGCCGGA
GCTCTCATCTCATCACACACCAGAAAATTCACACTGGAGAGAAGCCTTATGAGTGTAATGAGTGTTGGCG
AAGCTTTGGTGAAAGGTCAGATCTAATTAAACATCAGAGAACCCACACAGGGGAGAAGCCCTACGAGTGT
GTGCAGTGTGGGAAAGGTTTCACCCAGAGCTCCAACCTCATCACACATCAAAGAGTTCACACGGGAGAGA
AACCTTATGAATGTACCGAATGTGAGAAGAGTTTCAGCAGGAGCTCAGCTCTTATTAAACATAAGAGAGT
TCATACGGACTAA

Translation (470 aa):
MAATLLMAGSQAPVTFEDMAMYLTREEWRPLDAAQRDLYRDVMQENYGNVVSLDFEIRSENEVNPKQEIS
EDVQFGTTSERPAENAEENPESEEGFESGDRSERQWGDLTAEEWVSYPLQPVTDLLVHKEVHTGIRYHIC
SHCGKAFSQISDLNRHQKTHTGDRPYKCYECGKGFSRSSHLIQHQRTHTGERPYDCNECGKSFGRSSHLI
QHQTIHTGEKPHKCNECGKSFCRLSHLIQHQRTHSGEKPYECEECGKSFSRSSHLAQHQRTHTGEKPYEC
NECGRGFSERSDLIKHYRVHTGERPYKCDECGKNFSQNSDLVRHRRAHTGEKPYHCNECGENFSRISHLV
QHQRTHTGEKPYECNACGKSFSRSSHLITHQKIHTGEKPYECNECWRSFGERSDLIKHQRTHTGEKPYEC
VQCGKGFTQSSNLITHQRVHTGEKPYECTECEKSFSRSSALIKHKRVHTD


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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