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Report for CCDS23207.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23207.1 Public Mus musculus 9 Tspan3 23 108 98 CCDS HistoryNCBI Gene:56434Re-query CCDS DB by CCDS ID:23207.1Re-query CCDS DB by GeneID:56434See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23207.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034876.9 ENSMUSP00000034876.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034876.9Link to Ensembl Protein Viewer:ENSMUSP00000034876.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000034876Re-query CCDS DB by Protein ID:ENSMUSP00000034876
Original member Current member NCBI NM_019793.3 NP_062767.3 Accepted alive Link to Nucleotide Sequence:NM_019793.3Link to Protein Sequence:NP_062767.3Re-query CCDS DB by Nucleotide ID:NM_019793Re-query CCDS DB by Protein ID:NP_062767Link to BLAST:NP_062767.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062767.3 253 Q9QY33 253 100% 0 0

Chromosomal Locations for CCDS 23207.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 56136643 56136735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 56145489 56145572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 56145775 56145927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 56146514 56146615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 56147086 56147160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 56147387 56147578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 56160800 56160862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (762 nt):
ATGGGCCAATGCGGCATCACCTCCTCTAAGACCGTGCTGGTCTTCCTCAACCTCATCTTCTGGGGGGCAG
CTGGCATCCTCTGCTACGTGGGAGCCTATGTCTTCATCACCTATGACGACTATGACCACTTCTTCGAGGA
TGTGTACACGCTCTTCCCTGCCGTGGTGATCATAGCTGTAGGAGCCTTGCTTTTCATCATTGGCCTGATC
GGCTGCTGTGCTACAATCCGGGAGAGCCGCTGTGGACTTGCCACGTTTGTCTTCATCCTGCTCTTGGTTT
TCGTCACAGAAGTGGTTGTTGTGGTTTTGGGATACGTGTACAGAGCAAAGGTGGAGAACGAGGTTGATCG
CAGCATTCAGAAAGTGTATAAGACCTACAACGGGACCAACTCCGACGCTGCCAGCCGTGCTATTGACTAT
GTGCAGAGACAGTTGCACTGTTGTGGAATTCATAACTATTCAGACTGGGAAAATACAGATTGGTTCAAAG
AAACAAAAAACCAGAGTGTCCCTCTTAGCTGCTGCAGAGAGACTGCCAAAAGCTGTAACGGCAGCCTGGC
CAACCCCTCTGACCTCTACGCCGAGGGCTGTGAGGCTCTTGTTGTGAAGAAGCTACAAGAAATCTTGATG
CATGTTATCTGGGCAGCGTTGGCCTTTGCAGCTATTCAGCTGCTGGGCATGCTGTGCGCATGCATCGTGT
TGTGCAGACGGAGTAGAGATCCTGCCTATGAGCTCCTCATCACTGGCGGAACCTACGCGTAG

Translation (253 aa):
MGQCGITSSKTVLVFLNLIFWGAAGILCYVGAYVFITYDDYDHFFEDVYTLFPAVVIIAVGALLFIIGLI
GCCATIRESRCGLATFVFILLLVFVTEVVVVVLGYVYRAKVENEVDRSIQKVYKTYNGTNSDAASRAIDY
VQRQLHCCGIHNYSDWENTDWFKETKNQSVPLSCCRETAKSCNGSLANPSDLYAEGCEALVVKKLQEILM
HVIWAALAFAAIQLLGMLCACIVLCRRSRDPAYELLITGGTYA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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