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Report for CCDS23034.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23034.1 Public Mus musculus 9 Or10d1c 23 108 98 CCDS HistoryNCBI Gene:258434Re-query CCDS DB by CCDS ID:23034.1Re-query CCDS DB by GeneID:258434See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 23034.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074211.1 ENSMUSP00000073835.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074211.1Link to Ensembl Protein Viewer:ENSMUSP00000073835.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000074211Re-query CCDS DB by Protein ID:ENSMUSP00000073835
Original member Current member EBI ENSMUST00000214324.2 ENSMUSP00000149799.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214324.2Link to Ensembl Protein Viewer:ENSMUSP00000149799.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214324Re-query CCDS DB by Protein ID:ENSMUSP00000149799
Original member Current member EBI ENSMUST00000216823.1 ENSMUSP00000150864.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216823.1Link to Ensembl Protein Viewer:ENSMUSP00000150864.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216823Re-query CCDS DB by Protein ID:ENSMUSP00000150864
Original member Current member NCBI NM_146442.1 NP_666653.1 Accepted alive Link to Nucleotide Sequence:NM_146442.1Link to Protein Sequence:NP_666653.1Re-query CCDS DB by Nucleotide ID:NM_146442Re-query CCDS DB by Protein ID:NP_666653Link to BLAST:NP_666653.1

Chromosomal Locations for CCDS 23034.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 38982110 38983042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (933 nt):
ATGCGGAATTTCTCAGTTGTGACTCAATTTATCCTTCTGGGCATCCCTCATACAGAGGGTGTGGAGATCA
TGCTCTTTGTCCTGTTTTTGTCTTTCTACATCTTCACCTTAGTGGGGAACTTGCTCATACTTTTTGCGAT
TGTCTCCTCCAGTCGGCTTCACACTCCCATGTACTTCTTCCTGTGCCAGCTGTCAGTGTGTGATATATTT
TTTCCCTCCGTTAGCTCTCCCAAGATGCTGTTCTACCTCTCAGGAAATAGCAGAGCCATCTCCTATACAG
GCTGTGTTTGCCAGCTCTTCTTCTACCATTTCCTTGGCTGTACTGAATGTTTCCTATACACAGTGATGGC
TTATGACCGCTTTATTGCCATATGCTTCCCTCTAAGGTACTCAATAATCATGAACCACAAAGTGTGTGCC
ATCATGGCTGTGGGGACATCATTTTTTGGCTGCATTCAGGCTACTTTTCTGACCACTCTAACCTTCCAGT
TGCCCTATTGTGGTCCCAATGAAGTGGATTATTACTTCTGTGATATCCCTGTAATGCTGAAGCTGGCTTG
TGCAGACACATCAACCCTAGAGATGGTGGGTCTCATCAGTGTGGGGCTGATGCCCCTCAGCTGCTTCCTC
CTCATTCTCACCTCTTACAGCTTCATCCTTTGCTCCATTCTTCAGATCCGCTCTACTGAGGGCCGGCATA
GAGCCTTCTCTACCTGCAGTGCCCATCTCACTGCCATTCTCCTGGCCTTCATGCCAGTAGTCCTCATATA
CCTCCAGCCTACTCCCAATCCCTGGCTTAATGCAGCAGTTCAAGTCTTGAATAACCTGGTGACACCTATG
CTGAATCCTTTGATCTATAGCCTAAGGAATAAGGAAGTAAAATGTTCTCTAAAGAAAATGCTACAGCAAG
GGCCTATTCTGTCTAAAAAGTGA

Translation (310 aa):
MRNFSVVTQFILLGIPHTEGVEIMLFVLFLSFYIFTLVGNLLILFAIVSSSRLHTPMYFFLCQLSVCDIF
FPSVSSPKMLFYLSGNSRAISYTGCVCQLFFYHFLGCTECFLYTVMAYDRFIAICFPLRYSIIMNHKVCA
IMAVGTSFFGCIQATFLTTLTFQLPYCGPNEVDYYFCDIPVMLKLACADTSTLEMVGLISVGLMPLSCFL
LILTSYSFILCSILQIRSTEGRHRAFSTCSAHLTAILLAFMPVVLIYLQPTPNPWLNAAVQVLNNLVTPM
LNPLIYSLRNKEVKCSLKKMLQQGPILSKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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