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Report for CCDS22976.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22976.1 Public Mus musculus 9 Hepacam 23 108 98 CCDS HistoryNCBI Gene:72927Re-query CCDS DB by CCDS ID:22976.1Re-query CCDS DB by GeneID:72927See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22976.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000051839.8 ENSMUSP00000054105.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051839.8Link to Ensembl Protein Viewer:ENSMUSP00000054105.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000051839Re-query CCDS DB by Protein ID:ENSMUSP00000054105
Original member Current member NCBI NM_175189.4 NP_780398.2 Accepted alive Link to Nucleotide Sequence:NM_175189.4Link to Protein Sequence:NP_780398.2Re-query CCDS DB by Nucleotide ID:NM_175189Re-query CCDS DB by Protein ID:NP_780398Link to BLAST:NP_780398.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780398.2 418 Q640R3 418 100% 0 0

Chromosomal Locations for CCDS 22976.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 37367677 37367761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37380463 37380804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37381542 37381823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37382356 37382455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37383381 37383454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37383854 37383924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37384509 37384811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1257 nt):
ATGAAGAGAGAAAGGGGAGCCCTGTCAAGAGCCTCCAGGGCTCTGCGCCTCTCTCCTTTTGTCTACCTGC
TTCTCATCCAGCCAGTCCCCCTGGAGGGGGTGAACATCACCAGCCCAGTACGTCTGATCCACGGCACAGT
GGGGAAGTCGGCCCTGCTTTCCGTGCAGTACAGTAGCACCAGCAGCGACAAGCCCGTGGTGAAGTGGCAG
CTGAAGCGTGACAAGCCAGTGACCGTGGTGCAGTCTATAGGCACAGAGGTCATTGGCACTCTGCGGCCTG
ACTATCGAGACCGTATCCGGCTCTTTGAAAATGGCTCCTTGCTTCTCAGCGACCTGCAGCTGGCGGATGA
GGGAACCTATGAAGTGGAGATTTCCATCACTGACGACACCTTCACCGGGGAGAAGACCATCAACCTCACC
GTGGATGTGCCCATTTCAAGGCCGCAGGTATTAGTGGCTTCAACCACTGTGCTGGAGCTCAGTGAGGCCT
TCACCCTCAACTGCTCCCATGAGAATGGCACCAAGCCTAGCTACACGTGGCTGAAGGATGGCAAACCCCT
CCTCAATGACTCCCGAATGCTCCTGTCCCCTGACCAAAAGGTGCTCACCATCACCCGAGTACTCATGGAA
GATGACGACCTGTACAGCTGTGTGGTGGAGAACCCCATCAGCCAGGTCCGCAGCCTGCCTGTCAAGATCA
CTGTGTATAGAAGAAGCTCCCTCTATATCATCTTGTCTACAGGAGGCATCTTCCTCCTTGTGACCCTGGT
GACAGTTTGTGCCTGCTGGAAACCCTCAAAAAAGTCTAGGAAGAAGAGGAAGTTGGAGAAGCAAAACTCC
TTGGAATACATGGATCAGAATGATGACCGCCTAAAATCAGAAGCAGATACCCTACCCCGAAGTGGAGAAC
AGGAGCGGAAGAACCCAATGGCACTCTATATCCTGAAGGATAAGGATTCCTCAGAGCCAGATGAAAACCC
TGCTACAGAGCCACGGAGCACCACAGAACCCGGTCCCCCTGGCTACTCCGTGTCGCCGCCCGTGCCCGGC
CGCTCTCCGGGGCTTCCCATCCGCTCAGCCCGCCGCTACCCGCGCTCCCCAGCACGTTCCCCTGCCACTG
GCCGGACGCACACGTCGCCACCGCGGGCCCCGAGCTCGCCAGGCCGCTCGCGCAGCTCTTCGCGCTCACT
GCGGACTGCAGGCGTGCAGAGAATCCGGGAGCAGGACGAGTCAGGGCAGGTGGAGATCAGTGCCTGA

Translation (418 aa):
MKRERGALSRASRALRLSPFVYLLLIQPVPLEGVNITSPVRLIHGTVGKSALLSVQYSSTSSDKPVVKWQ
LKRDKPVTVVQSIGTEVIGTLRPDYRDRIRLFENGSLLLSDLQLADEGTYEVEISITDDTFTGEKTINLT
VDVPISRPQVLVASTTVLELSEAFTLNCSHENGTKPSYTWLKDGKPLLNDSRMLLSPDQKVLTITRVLME
DDDLYSCVVENPISQVRSLPVKITVYRRSSLYIILSTGGIFLLVTLVTVCACWKPSKKSRKKRKLEKQNS
LEYMDQNDDRLKSEADTLPRSGEQERKNPMALYILKDKDSSEPDENPATEPRSTTEPGPPGYSVSPPVPG
RSPGLPIRSARRYPRSPARSPATGRTHTSPPRAPSSPGRSRSSSRSLRTAGVQRIREQDESGQVEISA


Links Key
 Links to:   History report
  BLAST report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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