NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS22970.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22970.1 Public Mus musculus 9 Pate14 23 108 98 CCDS HistoryNCBI Gene:235973Re-query CCDS DB by CCDS ID:22970.1Re-query CCDS DB by GeneID:235973See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22970.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000093868.8 ENSMUSP00000091391.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000093868.8Link to Ensembl Protein Viewer:ENSMUSP00000091391.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000093868Re-query CCDS DB by Protein ID:ENSMUSP00000091391
Original member NCBI NM_001033325.2 NP_001028497.1 Updated not alive Link to Nucleotide Sequence:NM_001033325.2Link to Protein Sequence:NP_001028497.1Re-query CCDS DB by Nucleotide ID:NM_001033325Re-query CCDS DB by Protein ID:NP_001028497
Current member NCBI NM_001033325.3 NP_001028497.1 Accepted alive Link to Nucleotide Sequence:NM_001033325.3Link to Protein Sequence:NP_001028497.1Re-query CCDS DB by Nucleotide ID:NM_001033325Re-query CCDS DB by Protein ID:NP_001028497Link to BLAST:NP_001028497.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028497.1 99 Q3UN54 99 100% 0 0

Chromosomal Locations for CCDS 22970.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 36637236 36637360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 36637788 36637901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 36638486 36638546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (300 nt):
ATGGAAAAGTACCTCTTGTTGCTACTCTTGGGCATCTTTTTGCGGGTGGGCTTTCTGCAAGCTCTGACAT
GTGTCAGCTGTGGAAGGTTGAACTCTTCTGGGATTTGTGAGACAGCAGAAACCTCCTGTGAAGCTACAAA
TAATAGGAAGTGTGCTTTACGGCTACTCTATAAAGATGGCAAATTCCAATATGGCTTCCAGGGATGTCTT
GGAACATGCTTCAATTATACCAAGACCAACAATAATATGGTAAAGGAACATAAATGTTGTGATCACCAAA
ATTTGTGTAACAAGCCTTAA

Translation (99 aa):
MEKYLLLLLLGIFLRVGFLQALTCVSCGRLNSSGICETAETSCEATNNRKCALRLLYKDGKFQYGFQGCL
GTCFNYTKTNNNMVKEHKCCDHQNLCNKP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH