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Report for CCDS22937.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22937.1 Public Mus musculus 9 Thyn1 23 108 98 CCDS HistoryNCBI Gene:77862Re-query CCDS DB by CCDS ID:22937.1Re-query CCDS DB by GeneID:77862See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22937.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039161.9 ENSMUSP00000037614.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039161.9Link to Ensembl Protein Viewer:ENSMUSP00000037614.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000039161Re-query CCDS DB by Protein ID:ENSMUSP00000037614
Original member Current member EBI ENSMUST00000213683.1 ENSMUSP00000150823.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213683.1Link to Ensembl Protein Viewer:ENSMUSP00000150823.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213683Re-query CCDS DB by Protein ID:ENSMUSP00000150823
Original member Current member NCBI NM_144543.2 NP_653126.1 Accepted alive Link to Nucleotide Sequence:NM_144543.2Link to Protein Sequence:NP_653126.1Re-query CCDS DB by Nucleotide ID:NM_144543Re-query CCDS DB by Protein ID:NP_653126Link to BLAST:NP_653126.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_653126.1 226 Q91YJ3 226 100% 0 0

Chromosomal Locations for CCDS 22937.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 27000014 27000056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27003597 27003778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27005146 27005214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27005557 27005649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27006352 27006447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27006801 27006951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27007158 27007204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (681 nt):
ATGCCGAGACCCCGCAAGAGGCAGACTGGGACTGCTGGTCCAGACAGGAAGAAGCTATCCGGGAAACGTA
CTAAAACTGAAAACTCAGAAAGTACATCAGTCAAGCTAGAGAACTCCAGCCTTGAGATGACGACAACCTT
TAAAAATGGTGGCAAGAATTTAAGCAACTACTGGCTGATGAAGTCAGAGCCAGAAAGCCGGCTAGAGAAA
GGTATAGACATGAAGTTCAGCATCGAGGATCTCAAAGCACAGCCCAAGCAGACAGCTTGCTGGGATGGTG
TTCGCAACTATCAGGCTCGGAACTTCCTCAGGGCCATGAAATTGGAGGATGAAGCCTTCTTCTACCATAG
CAACTGCAAACAGCCTGGCATTGTTGGACTTATGAAGATTGTAAAGGAGGCTTACCCAGACCACACACAG
TTTGAGAAAAGTAATCCCCATTACGATCCATCCAGCAAAGAGGACGACCCTAAATGGTCGATGGTGGATG
TACAGTTTGTTCGAATGATGAAGCGCTTCATCCCTCTGGAGGAGCTTAAAACCTATCACCAAGCCCACAA
AGCTACTGGCGGCCCCTTAAAAAGCATGACTCTCTTCACCCGCCAGAGACTTTCCGTTCAGCCTCTGACT
CAAGAAGAGTTTGATTTTATTTTGAGCCTGGAGGAAACAGAACCAAGTTAA

Translation (226 aa):
MPRPRKRQTGTAGPDRKKLSGKRTKTENSESTSVKLENSSLEMTTTFKNGGKNLSNYWLMKSEPESRLEK
GIDMKFSIEDLKAQPKQTACWDGVRNYQARNFLRAMKLEDEAFFYHSNCKQPGIVGLMKIVKEAYPDHTQ
FEKSNPHYDPSSKEDDPKWSMVDVQFVRMMKRFIPLEELKTYHQAHKATGGPLKSMTLFTRQRLSVQPLT
QEEFDFILSLEETEPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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