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Report for CCDS22912.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22912.1 Public Mus musculus 9 Rab3d 23 108 98 CCDS HistoryNCBI Gene:19340Re-query CCDS DB by CCDS ID:22912.1Re-query CCDS DB by GeneID:19340See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22912.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115351.9 ENSMUSP00000111008.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115351.9Link to Ensembl Protein Viewer:ENSMUSP00000111008.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000115351Re-query CCDS DB by Protein ID:ENSMUSP00000111008
Original member Current member EBI ENSMUST00000122211.7 ENSMUSP00000113322.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000122211.7Link to Ensembl Protein Viewer:ENSMUSP00000113322.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000122211Re-query CCDS DB by Protein ID:ENSMUSP00000113322
Original member Current member NCBI NM_001324531.1 NP_001311460.1 Accepted alive Link to Nucleotide Sequence:NM_001324531.1Link to Protein Sequence:NP_001311460.1Re-query CCDS DB by Nucleotide ID:NM_001324531Re-query CCDS DB by Protein ID:NP_001311460Link to BLAST:NP_001311460.1
Original member Current member NCBI NM_031874.5 NP_114080.2 Accepted alive Link to Nucleotide Sequence:NM_031874.5Link to Protein Sequence:NP_114080.2Re-query CCDS DB by Nucleotide ID:NM_031874Re-query CCDS DB by Protein ID:NP_114080Link to BLAST:NP_114080.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001311460.1 219 P35276 219 100% 0 0
NP_114080.2 219 P35276 219 100% 0 0

Chromosomal Locations for CCDS 22912.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 21910484 21910671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21914645 21914769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21914863 21914981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21915705 21915932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (660 nt):
ATGGCATCCGCTAGTGAGCCCCCTGCCAGCCCAAGAGACGCTGCTGACCAGAACTTTGACTACATGTTCA
AACTGCTCTTGATCGGGAACAGCAGCGTGGGCAAGACATCCTTCCTGTTCCGCTATGCCGATGACTCCTT
CACCCCTGCCTTCGTGAGCACAGTGGGCATCGACTTCAAGGTCAAGACGGTCTACCGACATGACAAGAGG
ATCAAGCTGCAGATTTGGGACACAGCAGGCCAGGAGCGCTACCGGACAATCACCACGGCCTACTATCGCG
GAGCTATGGGTTTCCTGCTCATGTATGACATCGCCAACCAGGAGTCCTTCACCGCGGTGCAGGACTGGGC
TACGCAGATCAAAACCTATTCCTGGGACAATGCCCAGGTAATCCTCGTGGGGAACAAGTGTGACCTGGAA
GACGAACGGGTCGTACCTGCTGAGGATGGCCGGAGGCTCGCCGATGATCTTGGTTTTGAGTTCTTTGAGG
CCAGCGCCAAGGAGAATATCAATGTGAAGCAGGTGTTCGAGCGCCTGGTGGACATCATCTGTGACAAGAT
GAATGAATCCCTGGAACCCAGCTCCAGCCCAGGCAGCAATGGAAAAGGCCCAGCCCTTGGGGATACCCCA
CCCCCACAGCCGAGCAGCTGCAGCTGTTAG

Translation (219 aa):
MASASEPPASPRDAADQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKR
IKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFTAVQDWATQIKTYSWDNAQVILVGNKCDLE
DERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDIICDKMNESLEPSSSPGSNGKGPALGDTP
PPQPSSCSC


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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