NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS22894.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22894.1 Public Mus musculus 9 Cdc37 23 108 98 CCDS HistoryNCBI Gene:12539Re-query CCDS DB by CCDS ID:22894.1Re-query CCDS DB by GeneID:12539See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22894.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019615.10 ENSMUSP00000019615.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019615.10Link to Ensembl Protein Viewer:ENSMUSP00000019615.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000019615Re-query CCDS DB by Protein ID:ENSMUSP00000019615
Original member NCBI NM_016742.4 NP_058022.1 Updated not alive Link to Nucleotide Sequence:NM_016742.4Link to Protein Sequence:NP_058022.1Re-query CCDS DB by Nucleotide ID:NM_016742Re-query CCDS DB by Protein ID:NP_058022
Current member NCBI NM_016742.5 NP_058022.1 Accepted alive Link to Nucleotide Sequence:NM_016742.5Link to Protein Sequence:NP_058022.1Re-query CCDS DB by Nucleotide ID:NM_016742Re-query CCDS DB by Protein ID:NP_058022Link to BLAST:NP_058022.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058022.1 379 Q61081 379 100% 0 0

Chromosomal Locations for CCDS 22894.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 21139808 21139963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21140758 21140829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21140953 21141135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21142011 21142133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21142213 21142328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21142422 21142530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21142947 21143225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21149756 21149857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1140 nt):
ATGGTGGACTACAGCGTTTGGGATCACATCGAGGTGTCGGACGATGAGGACGAGACGCACCCCAACATAG
ACACTGCCAGCCTCTTCCGCTGGCGGCACCAGGCCCGGGTGGAACGCATGGAGCAGTTTCAGAAGGAGAA
AGAGGAACTGGACCGGGGCTGCCGGGAGTGCAAGCGCAAGGTAGCCGAGTGCCAGCGCAAGCTGAAGGAG
CTGGAAGTGGCTGAGAGCGATGGCCAGGTGGAGCTTGAGCGGCTGAGAGCTGAGGCACAGCAACTGCGCA
AGGAGGAGCGGAGCTGGGAGCAGAAGCTGGAAGACATGCGCAAAAAGGAGAAGAACATGCCCTGGAATGT
GGACACGCTCAGCAAAGATGGCTTTAGCAAGAGCATGGTCAATACCAAGCCTGAGAAGGCAGAGGAGGAC
TCAGAGGAGGCAAGGGAGCAGAAACACAAGACCTTCGTTGAAAAATATGAGAAACAGATCAAGCATTTCG
GCATGCTCCACCGCTGGGATGACAGCCAGAAATACCTGTCGGACAACGTCCACCTGGTGTGTGAGGAAAC
GGCCAACTACCTGGTTATCTGGTGCATTGACCTGGAGGTAGAGGAGAAATGTGCACTGATGGAGCAGGTA
GCTCACCAGACCATGGTGATGCAGTTTATTCTGGAGCTGGCCAAGAGTCTGAAGGTCGACCCCCGAGCCT
GCTTCCGGCAGTTTTTCACCAAGATCAAGACCGCTGACCACCAGTACATGGAGGGCTTCAAGTATGAACT
GGAAGCCTTTAAGGAGCGAGTGCGGGGCCGCGCCAAGCTGCGAATAGAGAAGGCCATGAAGGAATATGAA
GAGGAGGAGCGCAAGAAGAGGCTAGGCCCTGGTGGCCTGGACCCCGTGGAGGTCTACGAATCCCTGCCTG
AGGAGCTGCAGAAGTGCTTTGATGTGAAGGATGTACAGATGCTGCAAGACGCCATCAGCAAAATGGATCC
CACTGATGCCAAGTATCACATGCAGCGTTGCATCGATTCTGGCCTCTGGGTCCCCAACTCCAAGTCTGGT
GAGGCCAAGGAGGGGGAGGAGGCGGGCCCCGGGGACCCATTGCTGGAAGCCGTCCCCAAAGCGGGCAACG
AGAAAGACGTCAGTGCGTGA

Translation (379 aa):
MVDYSVWDHIEVSDDEDETHPNIDTASLFRWRHQARVERMEQFQKEKEELDRGCRECKRKVAECQRKLKE
LEVAESDGQVELERLRAEAQQLRKEERSWEQKLEDMRKKEKNMPWNVDTLSKDGFSKSMVNTKPEKAEED
SEEAREQKHKTFVEKYEKQIKHFGMLHRWDDSQKYLSDNVHLVCEETANYLVIWCIDLEVEEKCALMEQV
AHQTMVMQFILELAKSLKVDPRACFRQFFTKIKTADHQYMEGFKYELEAFKERVRGRAKLRIEKAMKEYE
EEERKKRLGPGGLDPVEVYESLPEELQKCFDVKDVQMLQDAISKMDPTDAKYHMQRCIDSGLWVPNSKSG
EAKEGEEAGPGDPLLEAVPKAGNEKDVSA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH