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Report for CCDS22824.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22824.2 Reviewed, update pending Mus musculus 9 Piwil4 23 108 98 CCDS HistoryNCBI Gene:330890Re-query CCDS DB by CCDS ID:22824.2Re-query CCDS DB by GeneID:330890See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 22824.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115644.8 ENSMUSP00000111308.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115644.8Link to Ensembl Protein Viewer:ENSMUSP00000111308.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000115644Re-query CCDS DB by Protein ID:ENSMUSP00000111308
Original member Current member NCBI NM_001368831.1 NP_001355760.1 Pending alive Link to Nucleotide Sequence:NM_001368831.1Link to Protein Sequence:NP_001355760.1Re-query CCDS DB by Nucleotide ID:NM_001368831Re-query CCDS DB by Protein ID:NP_001355760Link to BLAST:NP_001355760.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001355760.1 848 Q8CGT6-1 848 100% 0 0

Chromosomal Locations for CCDS 22824.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 14702358 14702474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 14703025 14703172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 14703590 14703718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 14704906 14705059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 14706209 14706279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 14708862 14708965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 14709912 14710112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 14712270 14712342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 14714843 14715027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 14715728 14715839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 14718236 14718353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 14720037 14720160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 14725865 14725976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 14727329 14727526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 14728644 14728724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 14729875 14729996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 14734443 14734657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 14736810 14736941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 14739391 14739454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 14740458 14740544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2547 nt):
ATGAGTGGACGGGCCCGTGTGAGAGCGCGAGGCATCACCACTGGCCACAGTGCTAGGGAAGTGGGGCGGT
CCTCAAGAGACCTCATGGTTACATCTGCCAGTCCTGGGGACAGCGAGGCCGGAGGTGGGACAAGTGTCAT
TTCACAGCCATATGAACTTGGTGTCTCTTCTGGTGATGGTGGACGTACCTTCATGGAAAGAAGAGGCAAA
GGCAGACAGGACTTCGAAGAGTTGGGTGTCTGTACCAGGGAAAAGTTGACCCACGTAAAAGATTGTAAAA
CAGGTTCTAGCGGAATACCTGTGCGGCTGGTTACAAATCTCTTTAATTTAGATTTGCCCCAGGATTGGCA
GCTGTACCAGTACCATGTCACGTACAGCCCAGATTTAGCCTCTAGGAGGCTGAGGATTGCTTTGCTTTAT
AATCACAGCATACTCTCAGACAAGGCAAAAGCATTTGACGGTGCCAGCCTTTTCCTCTCAGAAAAGCTGG
ACCAGAAGGTCACAGAACTGACAAGTGAAACACAAAGAGGTGAGACTATAAAGATAACGCTCACCCTAAC
GAGCAAGCTCTTCCCAAACTCCCCTGTGTGCATTCAGTTCTTCAATGTCATCTTCAGAAAGATCTTGAAA
AACTTGAGTATGTACCAAATTGGACGGAACTTCTATAAGCCTTCAGAACCAGTGGAGATCCCTCAGTACA
AATTGTCCCTGTGGCCTGGGTTTGCCATTTCTGTGTCTCACTTTGAAAGCAAGCTCCTATTCAATGCTGA
CGTGAACTACAAAGTCCTCCGCAATGAGACCGTTCTGGACTTCATGACTGATCTCTGCCTCAGAACTGGC
ATGTCTTGCTTCACCGAGATGTGCCACAAACAACTAGTGGGGCTCGTTGTCCTTACCAGATACAACAACA
AAACATATCGTATCGATGACATTGACTGGTCTGTGAAGCCCACACAGGCCTTTCAGAAGCGGGACGGCTC
AGAGGTCACATATGTGGATTACTACAAGCAGCAATATGATATCACCTTATCTGACCTAAATCAGCCAGTG
CTTGTTAGTCTGTTGAAAAGAAAGAGAAATGATAACTCTGAGCCTCAGATGGTCCACCTGATGCCAGAGC
TCTGCTTTCTCACAGGCCTGAGCAGCCAAGCAACCTCAGATTTCCGCCTGATGAAGGCAGTAGCTGAAGA
GACTCGGCTCAGTCCTGTGGGAAGGCAGCAGCAGCTGGCCCGACTCGTGGATGACATCCAGAGGAACCCA
GTGGCTCGGTTTGAGCTTGAGACCTGGGGATTGCATTTTGGAAGCCAGCTATCCCTGACCGGCCGGGTTG
TTCCCTCTGAAAAAATCCTGCTGCAGGACCACACATGTCAACCTGCATTTGCTGCTGACTGGTCCAAAGA
TATGCGATCTTGCAAAGTTTTGAGTTCTCAGCCTTTGAATAGATGGTTGATCGTGTGCTGTAACAGGGCT
GAGCACTTGATTGAAGCCTTTCTGAGCTGTCTGAGGAGAGTTGGAGGTTCCATGGGATTTAACGTGGGCT
ACCCCAAAATCATAAAAGTGGACGAGACCCCAGCAGCGTTCCTTCGAGCCATCCAGGTGCACGGCGACCC
CGATGTTCAGTTGGTGATGTGCATTCTGCCTTCTAATCAGAAGAACTATTACGACTCCATTAAAAAGTAT
TTGAGCTCTGACTGCCCAGTGCCAAGCCAGTGTGTGCTGACCCGGACCTTGAATAAGCAGGGAACGATGC
TGAGTGTGGCCACCAAGATCGCCATGCAGATGACCTGCAAACTTGGCGGAGAGCTGTGGTCTGTGGAGAT
CCCATTGAAGTCCCTGATGGTCGTGGGTATTGATATCTGCAGAGATGCCCTCAACAAGAATGTGGTGGTC
GTCGGGTTTGTAGCCAGCATTAATTCCAGGATCACCAGGTGGTTTTCCCGCTGTGTCCTTCAGAGAACAG
CGGCTGATATTGCAGATTGCCTCAAAGTCTGCATGACTGGTGCTCTCAACCGGTGGTACAGACACAACCA
TGACTTGCCGGCACGGATAGTCGTGTACCGGGACGGTGTAGGCAATGGCCAGCTAAAGGCAGTTTTGGAA
TATGAAGTCCCACAGCTACTGAAAAGTGTAACAGAGTGCGGCTCGGATGCCAGGAGCTGCAGACTGTCCG
TGGTTGTGGTCAGGAAGAGATGTCTACTGCGCCTCTTTGCTTCGACTGACCACACTGTGCAGAACCCCCC
ACTCGGCACTGTTGTGGACTCAGAAGCAACACGTCCGGAGTGGTATGACTTCTACCTGATCAGCCAGACT
GCTAACCGGGGGACTGTTAGTCCCACCCACTACAACGTTATCTATGATGACAATGCCTTGAAGCCTGACC
ACATGCAGCGACTGACCTTCAAACTGTGCCATCTCTACTACAACTGGCAGGGCTTAATCAGTGTCCCCGC
ACCATGCCAATATGCACACAAGCTGACCTTCCTGGTGGCACAAAGTGTCCACAAGGAACCAAGTCTGGAA
TTAGCCAATAATCTTTTCTACCTCTGA

Translation (848 aa):
MSGRARVRARGITTGHSAREVGRSSRDLMVTSASPGDSEAGGGTSVISQPYELGVSSGDGGRTFMERRGK
GRQDFEELGVCTREKLTHVKDCKTGSSGIPVRLVTNLFNLDLPQDWQLYQYHVTYSPDLASRRLRIALLY
NHSILSDKAKAFDGASLFLSEKLDQKVTELTSETQRGETIKITLTLTSKLFPNSPVCIQFFNVIFRKILK
NLSMYQIGRNFYKPSEPVEIPQYKLSLWPGFAISVSHFESKLLFNADVNYKVLRNETVLDFMTDLCLRTG
MSCFTEMCHKQLVGLVVLTRYNNKTYRIDDIDWSVKPTQAFQKRDGSEVTYVDYYKQQYDITLSDLNQPV
LVSLLKRKRNDNSEPQMVHLMPELCFLTGLSSQATSDFRLMKAVAEETRLSPVGRQQQLARLVDDIQRNP
VARFELETWGLHFGSQLSLTGRVVPSEKILLQDHTCQPAFAADWSKDMRSCKVLSSQPLNRWLIVCCNRA
EHLIEAFLSCLRRVGGSMGFNVGYPKIIKVDETPAAFLRAIQVHGDPDVQLVMCILPSNQKNYYDSIKKY
LSSDCPVPSQCVLTRTLNKQGTMLSVATKIAMQMTCKLGGELWSVEIPLKSLMVVGIDICRDALNKNVVV
VGFVASINSRITRWFSRCVLQRTAADIADCLKVCMTGALNRWYRHNHDLPARIVVYRDGVGNGQLKAVLE
YEVPQLLKSVTECGSDARSCRLSVVVVRKRCLLRLFASTDHTVQNPPLGTVVDSEATRPEWYDFYLISQT
ANRGTVSPTHYNVIYDDNALKPDHMQRLTFKLCHLYYNWQGLISVPAPCQYAHKLTFLVAQSVHKEPSLE
LANNLFYL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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