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Report for CCDS22694.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22694.2 Public Mus musculus 8 Atmin 23 108 98 CCDS HistoryNCBI Gene:234776Re-query CCDS DB by CCDS ID:22694.2Re-query CCDS DB by GeneID:234776See the combined annotation on chromosome 8 in Sequence Viewer

Public Note for CCDS 22694.2
The coding region has been updated to extend the N-terminus to one that is well supported by available conservation data. The use of an alternative upstream start codon would result in a protein that is 98 aa longer at the N-terminal.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 22694.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109099.3 ENSMUSP00000104727.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109099.3Link to Ensembl Protein Viewer:ENSMUSP00000104727.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000109099Re-query CCDS DB by Protein ID:ENSMUSP00000104727
Original member Current member NCBI NM_177700.4 NP_808368.3 Accepted alive Link to Nucleotide Sequence:NM_177700.4Link to Protein Sequence:NP_808368.3Re-query CCDS DB by Nucleotide ID:NM_177700Re-query CCDS DB by Protein ID:NP_808368Link to BLAST:NP_808368.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808368.3 818 Q6P9S1 818 100% 0 0

Chromosomal Locations for CCDS 22694.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 116943427 116943750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 116952874 116952999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 116954714 116954913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 116956253 116958059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2457 nt):
ATGGCGGCCACGGAGGCGGCGGCGGCCGATTCTGCGGGTCCGGCCCCGGGTGTCCCGGCCACGCCGGCGA
GCACGCGGGGAGCCGCCGCCGCCTCTAGCCCGTGGAGGCCGCCCGAGTCGCGACTGCAAGGCAGCCGGCC
GAGACCGGCCAGGGCTCGGGCCGCGGCCCCGGTGCCACCGGCCCGGGAGCTGATCCAGCCGACTGTGAGC
GAGCTGTCCCGGGCTGTGCGCACCAATATTCTGTGCACCGTGCGCGGCTGCGGCAAGATCCTGCCCAACA
GCCCTGCGCTCAACATGCACCTCGTCAAGAGCCACCGACTGCAGGATGGCATAGTAAACCCGACAATAAG
GAAAGACTTGACAACTGCACCGAAATTCTACTGTTGTCCAATCAAAGGATGTCCTCGAGGCCCCGACCGA
CCGTTTTCTCAGTTTTCTCTGGTTAAACAGCACTTTATGAAAATGCATGCAGAGAAGAAGCACAAATGCA
GTAAGTGCAGTAATTCCTACGGCACCGAGTGGGACCTGAAAAGACACGAGGAGGATTGTGGCAAGACCTT
CCAGTGTACGTGCGGCTGTCCCTACGCCAGCAGAACCGCACTGCAGTCTCACATCTACCGAACTGGCCAC
GAGATCCCTGCAGAGCACAGAGACCCACCTAGTAAAAAAAGGAAAATGGAAAGCTACCTGCAAAACCAAA
AGTTGTCCAGTAAAACCACTGAACCACTGAGCGACCAAGCAGCCCCGCGCCAAGATGCTGCTGAACCGGA
TGCTCCGGAGGTCAAGCCTGCAGCATCCCTCGAAGACTCCTGTAGCGCCCACACCAAAAAGCAGAGCGTC
GCGACGCCTCCCCGGTGTCCCCAGAAGTTGCTGTTACCAAAGCCCAAGGTGGCTCTGGTTAAACTCCCAG
TCATGCAGTTTTCCCCCGTGCCTGTCTTTGTGCCTACAGCGGAGTCCTCGGCCCAGCCTGTGGTGTTAGG
TGTGGATCACAGTTCTGCAGCCGGTACTGTGCACTTAGTACCTCTGTCGGTAGGAGCCCTGATCCTCAGC
CTGGACTCAGAGGCCTGCTCTCTGAAGGAGAGCCTACCTCTCTCAAAAATTATCAGTCCTGTTGTTGAGC
CAATGAATACAGGTGTTCAAGTGAACTTGGGTAAAAGCCTGTGTAGTCCTTTACAAGAGGTAGGGAGTGT
GTGTCAGAGGACCAGCATTTCCTCAAGCAACGTGCAGACAGATCTGACCTATGCCTCAGCCAACTTGATA
CCCTCTGCTCAGTGGCTCGGCCCTGATTCCTCTGTGTCATCGTGTTCTCAGACTGACCTGTCGTTTGATT
CTCAAGTGTCCCTTCCTGTTAGTGTCCACACCCAGACGTTGGTGCCCAGCTCTAAGGTCACTTCATCCAT
AGCTGCTCAGACAGATGCATTTATAGACGCCTGTTTCCAGCCTGGTGGGGTCTCCAGGGAAACCCAGACC
AGCAGGATGCAGAACCGCACAAACGACTCAGTGCCAGTGGGCCACACTGGCTTGTGTGGGGACATTTTTG
AAAGCGTGCATGCGTCATACAGTGTGCCTACTGACACCATCATGAGTAGCAGCTTAGTTGCAGAGACAGG
GACTCATGGTCTGCCACCTCAGAGTGACCCTAAGATCTTAGGCCAAGTCATGGAAAAGTCTGCACCCGTG
TTAAACTTCAGCACCCAGAACGGCTTGCTTCCTGCACACACCATGACAGATAATCAGACCCAAACCATAG
ATCTGCTGAGCGACTTGGAAAACATCTTGTCAAGTAACCTGCCAGGTCAAACACTGGATAACCGGAGTCT
CTTGTCCGACACCAACCCCGGACCTGACGCCCAGCTCCCAGCTGGCTCAGCGCAGAATTCTGGGATTGAT
TTTGATATTGAAGAGTTCCTCTCAGCCTCCAATATCCAGACTCAGACTGAGGAGAGTGAGCTCAGCTCCA
TGAGCACTGAGCCGGTCCTGGAGTCCCTGGACATCGAGACGCAGACCGACGTCCTCCTCTCAGATCCCTC
CACACAGCCCTATGGCTTCAGAGCGGGGTCAGGCTTCCTGGGCCTTGAGATGTTCGACACACAGACACAA
ACAGACTTAAACTTCTTCTTAGACAGTAGTCCTCACCTGCCCCTGGGCAGCATCCTGAAACACTCCAGCT
TCTCCATGAGTACCGACTCCTCTGACACAGAGACCCAAACTGAAGGAGCCTGCCCTGCTCGGCACCTGCC
TGCTCTGGAGAGCAAGGTCCAGTTGAGCAGCACAGAAACACAAACCATGAGTTCTGGCTTCGAGCCCCTG
GGGAACTTGTTCCTCACCAGCAACGAAACTCAGACAGCAATGGATGACTTCCTTCTAGCCGATCTGGCCT
GGAATACGATGGAGTCCCAGTTCAGCTCCGTGGAAACCCAGACATGCGCAGAGCTGCACGCTGTCTCCAG
CTTCTGA

Translation (818 aa):
MAATEAAAADSAGPAPGVPATPASTRGAAAASSPWRPPESRLQGSRPRPARARAAAPVPPARELIQPTVS
ELSRAVRTNILCTVRGCGKILPNSPALNMHLVKSHRLQDGIVNPTIRKDLTTAPKFYCCPIKGCPRGPDR
PFSQFSLVKQHFMKMHAEKKHKCSKCSNSYGTEWDLKRHEEDCGKTFQCTCGCPYASRTALQSHIYRTGH
EIPAEHRDPPSKKRKMESYLQNQKLSSKTTEPLSDQAAPRQDAAEPDAPEVKPAASLEDSCSAHTKKQSV
ATPPRCPQKLLLPKPKVALVKLPVMQFSPVPVFVPTAESSAQPVVLGVDHSSAAGTVHLVPLSVGALILS
LDSEACSLKESLPLSKIISPVVEPMNTGVQVNLGKSLCSPLQEVGSVCQRTSISSSNVQTDLTYASANLI
PSAQWLGPDSSVSSCSQTDLSFDSQVSLPVSVHTQTLVPSSKVTSSIAAQTDAFIDACFQPGGVSRETQT
SRMQNRTNDSVPVGHTGLCGDIFESVHASYSVPTDTIMSSSLVAETGTHGLPPQSDPKILGQVMEKSAPV
LNFSTQNGLLPAHTMTDNQTQTIDLLSDLENILSSNLPGQTLDNRSLLSDTNPGPDAQLPAGSAQNSGID
FDIEEFLSASNIQTQTEESELSSMSTEPVLESLDIETQTDVLLSDPSTQPYGFRAGSGFLGLEMFDTQTQ
TDLNFFLDSSPHLPLGSILKHSSFSMSTDSSDTETQTEGACPARHLPALESKVQLSSTETQTMSSGFEPL
GNLFLTSNETQTAMDDFLLADLAWNTMESQFSSVETQTCAELHAVSSF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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