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Report for CCDS2265.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2265.1 Public Homo sapiens 2 HOXD11 24 110 108 CCDS HistoryNCBI Gene:3237Re-query CCDS DB by CCDS ID:2265.1Re-query CCDS DB by GeneID:3237See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2265.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000249504.7 ENSP00000249504.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000249504.7Link to Ensembl Protein Viewer:ENSP00000249504.5Re-query CCDS DB by Nucleotide ID:ENST00000249504Re-query CCDS DB by Protein ID:ENSP00000249504
Original member Current member NCBI NM_021192.3 NP_067015.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_021192.3Link to Protein Sequence:NP_067015.2Re-query CCDS DB by Nucleotide ID:NM_021192Re-query CCDS DB by Protein ID:NP_067015Link to BLAST:NP_067015.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067015.2 338 P31277 338 100% 0 0

Chromosomal Locations for CCDS 2265.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 176107356 176108136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 176108907 176109142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1017 nt):
ATGAACGACTTTGACGAGTGCGGCCAGAGCGCAGCCAGCATGTACCTGCCGGGCTGCGCCTACTATGTGG
CCCCGTCTGACTTCGCTAGCAAGCCTTCGTTCCTTTCCCAACCGTCGTCCTGCCAGATGACTTTCCCCTA
CTCTTCCAACCTGGCTCCGCACGTCCAGCCCGTGCGCGAAGTGGCCTTCCGCGACTACGGCCTGGAGCGC
GCCAAGTGGCCGTACCGCGGCGGCGGCGGCGGCGGCAGCGCGGGGGGCGGCAGCAGCGGGGGCGGCCCCG
GCGGGGGCGGCGGCGGCGCGGGGGGCTACGCTCCCTACTACGCGGCGGCGGCGGCGGCGGCTGCGGCGGC
CGCGGCGGCCGAGGAGGCGGCCATGCAACGCGAGCTTCTCCCGCCCGCGGGCCGCCGGCCGGACGTGCTC
TTCAAGGCGCCTGAGCCGGTGTGCGCTGCGCCGGGGCCGCCGCACGGCCCCGCGGGCGCCGCCTCCAACT
TCTACAGCGCGGTGGGCCGCAATGGCATCTTGCCACAGGGCTTCGACCAGTTCTACGAGGCAGCGCCCGG
GCCCCCGTTCGCCGGGCCGCAGCCCCCGCCGCCACCCGCGCCGCCACAGCCCGAGGGCGCAGCCGACAAG
GGCGACCCCAGGACCGGGGCTGGTGGCGGCGGGGGCAGTCCCTGCACCAAGGCGACCCCTGGCTCGGAGC
CCAAGGGGGCAGCAGAAGGCAGCGGTGGCGACGGCGAGGGCCCCCCGGGAGAGGCGGGGGCCGAGAAGAG
CAGCAGCGCAGTTGCCCCCCAGCGGTCCCGGAAAAAGCGCTGTCCCTATACCAAGTACCAGATCCGCGAA
CTGGAACGCGAGTTTTTCTTTAACGTGTACATAAACAAAGAGAAAAGACTTCAACTCTCTCGGATGCTCA
ACCTCACTGACCGGCAAGTCAAAATCTGGTTCCAGAATCGCAGGATGAAAGAAAAGAAACTGAACAGAGA
CCGTCTGCAGTATTTCACTGGAAACCCCTTATTTTGA

Translation (338 aa):
MNDFDECGQSAASMYLPGCAYYVAPSDFASKPSFLSQPSSCQMTFPYSSNLAPHVQPVREVAFRDYGLER
AKWPYRGGGGGGSAGGGSSGGGPGGGGGGAGGYAPYYAAAAAAAAAAAAAEEAAMQRELLPPAGRRPDVL
FKAPEPVCAAPGPPHGPAGAASNFYSAVGRNGILPQGFDQFYEAAPGPPFAGPQPPPPPAPPQPEGAADK
GDPRTGAGGGGGSPCTKATPGSEPKGAAEGSGGDGEGPPGEAGAEKSSSAVAPQRSRKKRCPYTKYQIRE
LEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKLNRDRLQYFTGNPLF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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