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Report for CCDS22524.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22524.1 Public Mus musculus 8 Lpcat2 23 108 98 CCDS HistoryNCBI Gene:270084Re-query CCDS DB by CCDS ID:22524.1Re-query CCDS DB by GeneID:270084See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22524.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046290.2 ENSMUSP00000049252.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046290.2Link to Ensembl Protein Viewer:ENSMUSP00000049252.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000046290Re-query CCDS DB by Protein ID:ENSMUSP00000049252
Original member Current member NCBI NM_173014.2 NP_766602.1 Accepted alive Link to Nucleotide Sequence:NM_173014.2Link to Protein Sequence:NP_766602.1Re-query CCDS DB by Nucleotide ID:NM_173014Re-query CCDS DB by Protein ID:NP_766602Link to BLAST:NP_766602.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766602.1 544 Q8BYI6-1 544 100% 0 0

Chromosomal Locations for CCDS 22524.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 92855455 92855625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 92864901 92865040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 92869648 92869865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 92871138 92871250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 92873048 92873108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 92874233 92874291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 92875555 92875589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 92879400 92879454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 92886566 92886648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 92889273 92889398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 92890673 92890826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 92909187 92909285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 92914243 92914378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 92918035 92918219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1635 nt):
ATGAACCGATGCGCCGAGGCGGCCGCTGTGGCGGCTACGGTCCCGGGTTCGGGCGTCGGGGACGCCGGGC
TGCGGCCACCCATGGTACCTCGCCAGGCGTCCTTCTTCCCGCCGCCGGTGCCCAACCCCTTCGTCCAGCA
GACTACGATCAGTGCCTCCCGAAGGCTGCAGATGTTTCTTCTTGGAATTATTCTGCTCCCAGTCCGTGCT
TTACTGGTTGGAATAATTTTGCTGCTCGCATGGCCATTTGCTGTCATTTCAACAGCATGCTGTCCTGAAA
AGCTGACCCATCCAATAAGCAATTGGAGGAGGAAGATCACTCGGCCCGCTTTGACATTTCTGGCGCGTGC
CATGTTCTTCTCCATGGGGTTTACGGTTACCGTGAAAGGAAAGGTTGCAAGCCCTCTGGAAGCGCCCATT
TTTGTCGTCGCTCCTCATTCCACGTTCTTCGACGGAATTGCCTGTGTAGTAGCTGGGCTGCCTTCGCTGG
TATCACGGAATGAGAATGCACAGACCCCTCTGGTTGGCAGACTGTTACGGGCTTTGCAGCCAGTTTTGGT
ATCCCGTGTTGACCCTGACTCCCGAAAAAACACAATCAATGAAATCAAAAAGCGAGCGACATCAGGTGGA
GAATGGCCCCAGATACTAGTTTTCCCAGAAGGTACTTGTACTAATCGCTCCTGTTTGATTACTTTTAAAC
CAGGAGCCTTCATCCCAGGAGTTCCAGTGCAGCCCGTCCTCCTCAGATACCCAAACAAGTTGGATACTGT
GACCTGGACCTGGCAAGGCTATACATTCCTCCAGCTGTGTGTGCTCACTTTCTGTCAACTCTTCACGAAG
GTGGAGATTGAGTTTATGCCTGTGCAAGCACCCAGTGAGGAAGAGAAGAACGATCCTGTCCTTTTCGCCA
GTAGAATCCGGAACTTAATGGCTGAAGCATTGGAAATACCCGTGACGGATCACACCTACGAAGACTGCAG
GCTGATGATCTCAGCGGGACAGCTCACGTTGCCTATGGAGGCCGGGCTGGTAGAATTTTCAAAGATTAGC
CGGAAACTGAAATTAGACTGGGATGGTATCCGGAAGCACTTGGATGAATATGCGTCTATCGCAAGCTCTT
CCAAAGGAGGCAGAATTGGAATCGAGGAGTTTGCGGAATACTTGAAGCTACCTGTTTCCGATGTCCTGAG
ACAACTTTTTGCACTCTTTGACAGGAATAATGATGGCAGTATTGACTTCCGAGAGTATGTGATCGGCCTG
GCTGTCTTGTGCAACCCTGCCAATACAGAAGAGATCATCCAGGTGGCATTTAAGCTCTTTGATGTTGATG
AGGACGGCTACATAACAGAGGAGGAGTTTTGCACCATTCTGCAGGCTTCTCTTGGAGTGCCTGACCTTAA
TGTTTCTGGTCTCTTCAGAGAAATTGCCCAACGGGACTCTGTTTCCTACGAGGAATTCAAAAGTTTCGCC
CTAAAGCACCCAGAATATGCCAAGATATTTACCACATACCTAGACCTCCAGACATGCCATGTATTCTCCT
TGCCAGAAGAGGTCCAGACAGCTCCCTCTGTTGCTAGTAATAAAGTCAGTCCTGAGAGCCAGGAGGAGGG
CACCTCAGACAAAAAGGTGGACTGA

Translation (544 aa):
MNRCAEAAAVAATVPGSGVGDAGLRPPMVPRQASFFPPPVPNPFVQQTTISASRRLQMFLLGIILLPVRA
LLVGIILLLAWPFAVISTACCPEKLTHPISNWRRKITRPALTFLARAMFFSMGFTVTVKGKVASPLEAPI
FVVAPHSTFFDGIACVVAGLPSLVSRNENAQTPLVGRLLRALQPVLVSRVDPDSRKNTINEIKKRATSGG
EWPQILVFPEGTCTNRSCLITFKPGAFIPGVPVQPVLLRYPNKLDTVTWTWQGYTFLQLCVLTFCQLFTK
VEIEFMPVQAPSEEEKNDPVLFASRIRNLMAEALEIPVTDHTYEDCRLMISAGQLTLPMEAGLVEFSKIS
RKLKLDWDGIRKHLDEYASIASSSKGGRIGIEEFAEYLKLPVSDVLRQLFALFDRNNDGSIDFREYVIGL
AVLCNPANTEEIIQVAFKLFDVDEDGYITEEEFCTILQASLGVPDLNVSGLFREIAQRDSVSYEEFKSFA
LKHPEYAKIFTTYLDLQTCHVFSLPEEVQTAPSVASNKVSPESQEEGTSDKKVD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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