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Report for CCDS22341.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22341.1 Public Mus musculus 8 Csgalnact1 23 108 98 CCDS HistoryNCBI Gene:234356Re-query CCDS DB by CCDS ID:22341.1Re-query CCDS DB by GeneID:234356See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22341.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000078350.12 ENSMUSP00000077459.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078350.12Link to Ensembl Protein Viewer:ENSMUSP00000077459.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000078350Re-query CCDS DB by Protein ID:ENSMUSP00000077459
Original member Current member EBI ENSMUST00000130214.7 ENSMUSP00000119817.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000130214.7Link to Ensembl Protein Viewer:ENSMUSP00000119817.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000130214Re-query CCDS DB by Protein ID:ENSMUSP00000119817
Original member Current member NCBI NM_001252623.1 NP_001239552.1 Accepted alive Link to Nucleotide Sequence:NM_001252623.1Link to Protein Sequence:NP_001239552.1Re-query CCDS DB by Nucleotide ID:NM_001252623Re-query CCDS DB by Protein ID:NP_001239552Link to BLAST:NP_001239552.1
Original member Current member NCBI NM_001364256.1 NP_001351185.1 Accepted alive Link to Nucleotide Sequence:NM_001364256.1Link to Protein Sequence:NP_001351185.1Re-query CCDS DB by Nucleotide ID:NM_001364256Re-query CCDS DB by Protein ID:NP_001351185Link to BLAST:NP_001351185.1
Original member Current member NCBI NM_172753.5 NP_766341.4 Accepted alive Link to Nucleotide Sequence:NM_172753.5Link to Protein Sequence:NP_766341.4Re-query CCDS DB by Nucleotide ID:NM_172753Re-query CCDS DB by Protein ID:NP_766341Link to BLAST:NP_766341.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001239552.1 530 Q8BJQ9 530 100% 0 0
NP_001351185.1 530 Q8BJQ9 530 100% 0 0
NP_766341.4 530 Q8BJQ9 530 100% 0 0

Chromosomal Locations for CCDS 22341.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 68358424 68358713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68362068 68362149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68372620 68372714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68373539 68373717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68388596 68388697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68401303 68401519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68460924 68461551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1593 nt):
ATGGTCCGCCGCGGGCTGCTGGGGTGGATTTCTCGGGTAGTGATTCTGCTGGTGCTGCTCTGTTGTGCCA
TCTCTGTCCTCTACATGTTAGCCTGCACTCCAAAAGGCGACCAGGAGCAGTTGGGACTGCCACGGGCCAA
TGGACCCACAGGCAAAGATGGCTACCAAGCGGTGCTGCAGGAGCGCGAGGAACAGCATCGTAACTATGTG
AATAGCCTTAAACGACAGATAGCTCAGCTAAAGGATGAACTGCAGGCACGCAGTGAGCAGTTCCGCAGTG
GGCAGGACCAGGCCAGCGATGCCACCAGCCTGCGCTCAGGCTGGGACCGTGAGCCCAAAGCCCAGGCCGA
TCTGCTGGCCTTCCTGCGTGGACAGGTGGACAAGGCCGAGGTACATGCCGGTGTCAAGCTGGCCACGGAG
TATGCTGCTGTGCCTTTTGATAGCTTCACTCTGCAGAAAGTATACCAGCTGGAGACTGGCCTGACCCGCC
ACCCTGAGGAGAAGCCAGTGAGGAAAGACAAGCGCGATGAGCTGGTAGAAGCCATCGAATCGGCCCTGGA
GAGTCTAAACAGCCCTGTGGAGAGCAGCCCACACCAGCGTCCTTACACAGCTGCAGACTTCATAGAAGGG
ATTTACCGAACCGAAAGGGATAAAGGCACTTTGTATGAGCTGACCTTCAAAGGGGACCACAAGCATGAAT
TCCAGCGACTTGTCCTATTTCGACCTTTTGGCCCCATCATGAAAGTGAAAAAGGAAAAACTCAACCTGGC
CAACACGCTTATCAATGTTATTGTGCCCCTAGCGAGGAGGGTGGACAAGTTCCGGCACTTCATGCAGAAC
TTCAGGGAGATGTGCATCCAACAGGATGGGAGAGTTCATCTCACCGTTGTTTATTTTGGGAAAGAAGAAA
TGAATGAAGTCAAAGGAATACTTGAAAACACTTCAAAAGCTGCCAATTTCAGAAACTTCACCTTCATCCA
ACTGAATGGAGAATTCTCCCGGGGAAAGGGACTGGATGTTGGAGCCCGCTTCTGGAAGGGAAGTAACGTC
CTGCTCTTTTTCTGTGATGTAGACATCTACTTCACCTCGGAGTTCCTCAACACTTGTAGGCTGAACACAC
AGCCAGGGAAGAAGGTATTTTATCCGGTTCTGTTCAGTCAGTATAACCCCGGCGTAATCTACGGCCATCA
CGATGCAGTCCCTCCGCTAGGACAGCAGCTGGTCATAAAGAAGGAAACAGGATTTTGGAGGGACTTTGGA
TTTGGGATGACATGTCAGTACCGGTCAGACTTCATCAACATAGGTGGATTTGACCTGGACATCAAAGGCT
GGGGTGGTGAAGATGTGCACCTGTACCGGAAATATCTCCATAGCAACCTCATAGTGGTCCGCACACCTGT
ACGGGGACTTTTCCACCTGTGGCATGAAAAGCACTGTATGGATGAACTGACCCCTGAGCAGTACAAGATG
TGCATGCAATCAAAGGCTATGAATGAAGCATCCCATGGGCAGCTGGGGATGCTTGTCTTCCGGCATGAAA
TAGAGGCTCATCTTCGCAAACAGAAGCAGAAAGCCAGCAGTAAAAAGACATGA

Translation (530 aa):
MVRRGLLGWISRVVILLVLLCCAISVLYMLACTPKGDQEQLGLPRANGPTGKDGYQAVLQEREEQHRNYV
NSLKRQIAQLKDELQARSEQFRSGQDQASDATSLRSGWDREPKAQADLLAFLRGQVDKAEVHAGVKLATE
YAAVPFDSFTLQKVYQLETGLTRHPEEKPVRKDKRDELVEAIESALESLNSPVESSPHQRPYTAADFIEG
IYRTERDKGTLYELTFKGDHKHEFQRLVLFRPFGPIMKVKKEKLNLANTLINVIVPLARRVDKFRHFMQN
FREMCIQQDGRVHLTVVYFGKEEMNEVKGILENTSKAANFRNFTFIQLNGEFSRGKGLDVGARFWKGSNV
LLFFCDVDIYFTSEFLNTCRLNTQPGKKVFYPVLFSQYNPGVIYGHHDAVPPLGQQLVIKKETGFWRDFG
FGMTCQYRSDFINIGGFDLDIKGWGGEDVHLYRKYLHSNLIVVRTPVRGLFHLWHEKHCMDELTPEQYKM
CMQSKAMNEASHGQLGMLVFRHEIEAHLRKQKQKASSKKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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