NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS22288.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22288.1 Public Mus musculus 8 Cfap97 23 108 98 CCDS HistoryNCBI Gene:66756Re-query CCDS DB by CCDS ID:22288.1Re-query CCDS DB by GeneID:66756See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22288.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034048.12 ENSMUSP00000034048.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034048.12Link to Ensembl Protein Viewer:ENSMUSP00000034048.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000034048Re-query CCDS DB by Protein ID:ENSMUSP00000034048
Original member Current member EBI ENSMUST00000164504.1 ENSMUSP00000133211.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164504.1Link to Ensembl Protein Viewer:ENSMUSP00000133211.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164504Re-query CCDS DB by Protein ID:ENSMUSP00000133211
Original member NCBI NM_001357215.1 NP_001344144.1 Updated not alive Link to Nucleotide Sequence:NM_001357215.1Link to Protein Sequence:NP_001344144.1Re-query CCDS DB by Nucleotide ID:NM_001357215Re-query CCDS DB by Protein ID:NP_001344144
Current member NCBI NM_001357215.2 NP_001344144.1 Accepted alive Link to Nucleotide Sequence:NM_001357215.2Link to Protein Sequence:NP_001344144.1Re-query CCDS DB by Nucleotide ID:NM_001357215Re-query CCDS DB by Protein ID:NP_001344144Link to BLAST:NP_001344144.1
Original member NCBI NM_001357216.1 NP_001344145.1 Updated not alive Link to Nucleotide Sequence:NM_001357216.1Link to Protein Sequence:NP_001344145.1Re-query CCDS DB by Nucleotide ID:NM_001357216Re-query CCDS DB by Protein ID:NP_001344145
Current member NCBI NM_001357216.2 NP_001344145.1 Accepted alive Link to Nucleotide Sequence:NM_001357216.2Link to Protein Sequence:NP_001344145.1Re-query CCDS DB by Nucleotide ID:NM_001357216Re-query CCDS DB by Protein ID:NP_001344145Link to BLAST:NP_001344145.1
Original member NCBI NM_025747.4 NP_080023.1 Updated not alive Link to Nucleotide Sequence:NM_025747.4Link to Protein Sequence:NP_080023.1Re-query CCDS DB by Nucleotide ID:NM_025747Re-query CCDS DB by Protein ID:NP_080023
Current member NCBI NM_025747.5 NP_080023.1 Accepted alive Link to Nucleotide Sequence:NM_025747.5Link to Protein Sequence:NP_080023.1Re-query CCDS DB by Nucleotide ID:NM_025747Re-query CCDS DB by Protein ID:NP_080023Link to BLAST:NP_080023.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344144.1 541 Q6ZPR1 541 100% 0 0
NP_001344145.1 541 Q6ZPR1 541 100% 0 0
NP_080023.1 541 Q6ZPR1 541 100% 0 0

Chromosomal Locations for CCDS 22288.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 46169575 46170652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 46181718 46181986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 46191580 46191730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 46192585 46192712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1626 nt):
ATGGATCGGTTTGGAGATATCTCAGAAGGTGAAGTAGACCACTCTTTCTTTGACAGTGATTTTGAAGATG
CAAAGAAATGTGAAAGTAATTCCATTTTTGACAAGCAAAATGATGATGACCTTAAGGAAGGAATAAATAA
GGACACCAAAAATGTAAACTTGAAATTTGGAGTACAAAATGATCATCTTAAGGAGAAAATAGATAATAAC
ACAGAAAATGTGAACTTGAAACTTGGGCTACAAACAACAGAAAATTACCTTACTCAGAAAGGAAATGAAA
GGAAAGCAAACTTTTCTTCAAAGGAACAACATATAGAAAATGATCCTACACAAGCACGAAGTTCCTCAGT
GTTGACTTCTTCACGATCAAAAAAATCGTGTGATGCCACAAAAGGACATAAATTAAACTTGCCCGTTCCA
GATAGAATTCCTAAGATTGTGAAAGGTGAGGACGATTACTACACGGATGGGGAGGAAAGCAGCGACGATG
GGAAGAAGTACGTGAGGTCTAAGTCAGCCAAGCCCTCTAGCAACTTAAAAAAAAACGTGAGTAAGAAGTA
TTCCTCCTCCTCCTTGTCTTCCTCATCTTCAAGATCAAACTCAGACTGCTCAGATATGGGGTCTGACAGG
CAAAGGAGATCTGAGTCACACTCATCAGGGAAGTGTGTTTCTAGTGTAACCCCCTCATCACCAAAACAGA
GGTGTAAGTCAGGAAGAAAATCAAGTGCACAGCCTTCCAGCACTAAACAAAAGACTGGTGACTATCATGA
GTCCGAAGGCAATGTACCAGACATAACTCCTTTGTCAACTCCAGATGTCAGCCCTGCCCAGTCGCTTGAG
TTGGGCCAACCGCCTGATCAAAAAGTAAAAGTTAAAAAACAAGAAAATGTGAGCCGGGATGTATATGAGG
ATGCAGAGGCTTTAAAGAATGATTCAAGATGTGTGAAATCAGCCAAAAGGAAAGAAAAGCATGGACAGAG
TTTTGCTCCAAAATCTTCAGTGTTAGATGCAAATCTAGACCGTAGATCTAAACAAAAAGTCTTACATGAC
ACAATGGACCTAAATCATCTGTTGAAAGCTTTCCTGCAGTTAGATAAAAAGGGACCACAGAAACATCACT
TTGAGCAGCCTGCAATAATACCTAGGAAGAACTACTCTTTCACAAGAGAAGAGGTGAGACAGATTGACCG
GGAAAATCAGAGGCTTTTGAAAGAACTGTCAAGACAGGCTGAAAAACCAGGAAGCAAAAGTACAATTCCC
GGAAGATCGATCGGCCATCCCCCTAAGTTGTATCATAGTGCTCTCAACAGACAGAGGGAACAACAAAGGA
TCGAAAGAGAAAATATGGCTTTATTGAAACGACTTGAAGCTGTGAAGCCAACAGTTGGCATGAAACGCTC
TGAACAGCTGATGGACTACCATCGGAATATGAGTTACCTCAATCCTTCACCGTCCGTCCGACGAGTGAGA
TCTACTCTTGGCCATTATAGCCCACTGAGAGGAGCTTCCAGGACATCCAGTGCAACCAGTGGTCTCAGCT
GTAAGACTGACCGATCAGTGTTGGACACATCCAATGGCTTTTTGCTAAGACCGAAACCCCCGAATGTTCG
TACTGCTTGGTTGTAA

Translation (541 aa):
MDRFGDISEGEVDHSFFDSDFEDAKKCESNSIFDKQNDDDLKEGINKDTKNVNLKFGVQNDHLKEKIDNN
TENVNLKLGLQTTENYLTQKGNERKANFSSKEQHIENDPTQARSSSVLTSSRSKKSCDATKGHKLNLPVP
DRIPKIVKGEDDYYTDGEESSDDGKKYVRSKSAKPSSNLKKNVSKKYSSSSLSSSSSRSNSDCSDMGSDR
QRRSESHSSGKCVSSVTPSSPKQRCKSGRKSSAQPSSTKQKTGDYHESEGNVPDITPLSTPDVSPAQSLE
LGQPPDQKVKVKKQENVSRDVYEDAEALKNDSRCVKSAKRKEKHGQSFAPKSSVLDANLDRRSKQKVLHD
TMDLNHLLKAFLQLDKKGPQKHHFEQPAIIPRKNYSFTREEVRQIDRENQRLLKELSRQAEKPGSKSTIP
GRSIGHPPKLYHSALNRQREQQRIERENMALLKRLEAVKPTVGMKRSEQLMDYHRNMSYLNPSPSVRRVR
STLGHYSPLRGASRTSSATSGLSCKTDRSVLDTSNGFLLRPKPPNVRTAWL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH