NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS22252.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22252.1 Public Mus musculus 8 Zdhhc2 23 108 98 CCDS HistoryNCBI Gene:70546Re-query CCDS DB by CCDS ID:22252.1Re-query CCDS DB by GeneID:70546See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22252.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049389.10 ENSMUSP00000041727.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049389.10Link to Ensembl Protein Viewer:ENSMUSP00000041727.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000049389Re-query CCDS DB by Protein ID:ENSMUSP00000041727
Original member Current member EBI ENSMUST00000128166.7 ENSMUSP00000123070.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000128166.7Link to Ensembl Protein Viewer:ENSMUSP00000123070.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000128166Re-query CCDS DB by Protein ID:ENSMUSP00000123070
Original member Current member EBI ENSMUST00000167766.1 ENSMUSP00000129996.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167766.1Link to Ensembl Protein Viewer:ENSMUSP00000129996.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167766Re-query CCDS DB by Protein ID:ENSMUSP00000129996
Original member Current member NCBI NM_178395.4 NP_848482.1 Accepted alive Link to Nucleotide Sequence:NM_178395.4Link to Protein Sequence:NP_848482.1Re-query CCDS DB by Nucleotide ID:NM_178395Re-query CCDS DB by Protein ID:NP_848482Link to BLAST:NP_848482.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848482.1 366 P59267 366 100% 0 0

Chromosomal Locations for CCDS 22252.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 40424043 40424169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 40445778 40445804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 40447051 40447145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 40454498 40454618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 40456031 40456100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 40456663 40456695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 40462088 40462208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 40464158 40464290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 40467429 40467555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 40467911 40468003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 40472913 40473025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 40474735 40474775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1101 nt):
ATGGCGCCCTCGGGCTCGGGCGGCGTGAGGCGGCGGTGCCGGCGGGTGCTCTACTGGATCCCGGTGGTGT
TCATCAGCTTGCTGCTGGGCTGGTCCTACTACGCCTACGCCATCCAGCTGTGCATAGTGTCCATGGAAAA
CATTGGTGAACAAGTTGTGTGCCTCATGGCTTATCATCTACTTTTTGCAATGTTTGTCTGGTCATACTGG
AAAACCATTTTTACATTGCCCATGAATCCTTCAAAAGAATTCCATCTCTCTTATGCAGAGAAAGAATTGC
TGGAGAGAGAGCCAAGAGGAGAAGCCCATCAGGAAGTTCTGAGGCGAGCAGCCAAAGACCTTCCCATCTA
CACCAGGACCATGTCCGGCGCAATCCGATATTGTGACAGATGCCAACTTATAAAACCAGACCGCTGTCAT
CATTGTTCCGTCTGTGATAAATGTATTTTGAAGATGGATCATCATTGCCCATGGGTGAACAATTGTGTTG
GATTTTCAAACTACAAATTCTTCCTTCTTTTCTTGGCTTACTCTCTGCTGTACTGCCTTTTCATTGCTGC
TACCGATTTACAGTATTTTATCAGATTTTGGACAAATGGTCTGCCTGATACTCAAGCCAAGTTCCATATT
ATGTTTTTATTCTTTGCTGCAGCTATGTTTTCTGTCAGCTTGTCCTCTCTGTTTGGTTATCATTGCTGGC
TAGTCAGCAAAAATAAATCTACTTTAGAGGCATTCAGAAATCCAGTATTTAGACACGGAACAGATAAGAA
CGGATTCAGCTTGGGTTTCAGTAAAAACATGAGACAAGTGTTTGGTGATGAGAAGAAATACTGGCTGTTA
CCAGTATTTTCAAGTCAAGGTGATGGCTGTTCCTTTCCAACTTGCCTTGTTAACCAGGATCCTGAACAAC
CTTCTACTCCTGCGGGACTAAATTCAACAGTGAAAAATCCTGAAAACCACCAGTTTCCTGCAAAGCCTCT
GAGAGAGTCCCAGAGCCATCTCCTTAAGGATTCTCAGACCTGGACAGAGAGCAGCGCAAACCCTGGGAAG
GGCAAAGCCGGTATGAGCAACCCTGCATTAACTATGGAGAACGAGACTTAG

Translation (366 aa):
MAPSGSGGVRRRCRRVLYWIPVVFISLLLGWSYYAYAIQLCIVSMENIGEQVVCLMAYHLLFAMFVWSYW
KTIFTLPMNPSKEFHLSYAEKELLEREPRGEAHQEVLRRAAKDLPIYTRTMSGAIRYCDRCQLIKPDRCH
HCSVCDKCILKMDHHCPWVNNCVGFSNYKFFLLFLAYSLLYCLFIAATDLQYFIRFWTNGLPDTQAKFHI
MFLFFAAAMFSVSLSSLFGYHCWLVSKNKSTLEAFRNPVFRHGTDKNGFSLGFSKNMRQVFGDEKKYWLL
PVFSSQGDGCSFPTCLVNQDPEQPSTPAGLNSTVKNPENHQFPAKPLRESQSHLLKDSQTWTESSANPGK
GKAGMSNPALTMENET


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH