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Report for CCDS22191.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22191.1 Public Mus musculus 8 Sfrp1 23 108 98 CCDS HistoryNCBI Gene:20377Re-query CCDS DB by CCDS ID:22191.1Re-query CCDS DB by GeneID:20377See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22191.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033952.7 ENSMUSP00000033952.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033952.7Link to Ensembl Protein Viewer:ENSMUSP00000033952.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000033952Re-query CCDS DB by Protein ID:ENSMUSP00000033952
Original member Current member NCBI NM_013834.3 NP_038862.2 Accepted alive Link to Nucleotide Sequence:NM_013834.3Link to Protein Sequence:NP_038862.2Re-query CCDS DB by Nucleotide ID:NM_013834Re-query CCDS DB by Protein ID:NP_038862Link to BLAST:NP_038862.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038862.2 314 Q8C4U3 314 100% 0 0

Chromosomal Locations for CCDS 22191.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 23411785 23412328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 23417330 23417407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 23446166 23446488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (945 nt):
ATGGGCGTCGGGCGCAGCGCGCGGGGTCGCGGCGGGGCCGCCTCGGGAGTGCTGCTGGCGTTGGCCGCCG
CTCTGCTGGCCGCGGGTTCGGCCAGCGAGTACGACTACGTGAGCTTCCAGTCCGACATCGGCTCGTATCA
GAGCGGGCGCTTCTACACCAAGCCCCCGCAGTGCGTGGACATCCCGGTGGACCTGAGGCTGTGCCACAAC
GTGGGCTACAAGAAGATGGTGCTGCCCAACCTGCTGGAGCACGAGACCATGGCAGAGGTGAAGCAGCAGG
CCAGCAGCTGGGTGCCGCTGCTCAACAAGAACTGCCACATGGGCACCCAGGTCTTCCTCTGTTCGCTCTT
CGCGCCCGTCTGTCTGGACCGGCCCATCTACCCGTGTCGCTGGCTCTGCGAGGCCGTGCGCGACTCGTGC
GAGCCGGTCATGCAGTTCTTCGGCTTCTACTGGCCCGAGATGCTCAAATGTGACAAGTTCCCCGAGGGCG
ACGTCTGCATCGCCATGACCCCGCCCAATACCACGGAAGCCTCTAAGCCCCAAGGTACAACCGTGTGTCC
TCCATGCGACAACGAGTTGAAGTCAGAGGCCATCATTGAACATCTCTGTGCAAGCGAGTTTGCACTGAGG
ATGAAAATCAAAGAAGTGAAGAAGGAAAACGGTGACAAGAAGATTGTCCCCAAGAAGAAGAAACCCTTGA
AGCTGGGGCCCATCAAGAAGAAGGAGCTGAAGCGGCTTGTGCTGTTCCTGAAGAACGGTGCCGACTGTCC
CTGCCACCAGCTGGACAACCTCAGCCACAACTTTCTCATCATGGGCCGCAAGGTGAAGAGCCAGTACCTG
CTGACAGCCATTCACAAGTGGGACAAGAAAAACAAGGAGTTCAAAAACTTCATGAAGAGAATGAAAAACC
ACGAGTGTCCCACCTTCCAGTCTGTTTTTAAGTGA

Translation (314 aa):
MGVGRSARGRGGAASGVLLALAAALLAAGSASEYDYVSFQSDIGSYQSGRFYTKPPQCVDIPVDLRLCHN
VGYKKMVLPNLLEHETMAEVKQQASSWVPLLNKNCHMGTQVFLCSLFAPVCLDRPIYPCRWLCEAVRDSC
EPVMQFFGFYWPEMLKCDKFPEGDVCIAMTPPNTTEASKPQGTTVCPPCDNELKSEAIIEHLCASEFALR
MKIKEVKKENGDKKIVPKKKKPLKLGPIKKKELKRLVLFLKNGADCPCHQLDNLSHNFLIMGRKVKSQYL
LTAIHKWDKKNKEFKNFMKRMKNHECPTFQSVFK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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