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Report for CCDS22179.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22179.1 Public Mus musculus 8 Vdac3 23 108 98 CCDS HistoryNCBI Gene:22335Re-query CCDS DB by CCDS ID:22179.1Re-query CCDS DB by GeneID:22335See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22179.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000009036.10 ENSMUSP00000009036.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000009036.10Link to Ensembl Protein Viewer:ENSMUSP00000009036.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000009036Re-query CCDS DB by Protein ID:ENSMUSP00000009036
Original member Current member NCBI NM_011696.2 NP_035826.1 Accepted alive Link to Nucleotide Sequence:NM_011696.2Link to Protein Sequence:NP_035826.1Re-query CCDS DB by Nucleotide ID:NM_011696Re-query CCDS DB by Protein ID:NP_035826Link to BLAST:NP_035826.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035826.1 283 Q60931 283 100% 0 0

Chromosomal Locations for CCDS 22179.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 22577511 22577602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22578043 22578100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22578992 22579142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22580340 22580567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22582083 22582135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22583584 22583736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22587553 22587602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22588726 22588792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (852 nt):
ATGTGTAACACACCAACTTATTGCGACCTAGGAAAGGCTGCCAAGGATGTCTTTAACAAAGGGTATGGGT
TTGGCATGGTCAAGATAGATCTGAAAACCAAGTCTTGTAGTGGAGTGGAATTTTCTACTTCAGGTCATGC
TTATACTGATACAGGGAAAGCATCAGGCAACCTAGAGACCAAATATAAGGTCTGCAACTATGGGCTCACC
TTCACCCAAAAGTGGAATACAGACAATACTCTTGGGACAGAAATCTCTTGGGAGAATAAGTTGGCTGAAG
GGTTGAAACTGACTCTTGATACCATATTTGTACCAAACACAGGAAAGAAGAGTGGGAAATTAAAGGCCTC
CTATAGACGGGATTGTTTTAGTCTCGGCAGTAATGTTGATATAGATTTTTCTGGACCGACCATCTATGGC
TGGGCTGTGTTGGCCTTTGAAGGTTGGCTTGCTGGCTATCAGATGAGTTTTGACACAGCCAAATCCAAAC
TGTCTCAGAATAATTTCGCTCTTGGTTACAAGGCTGCAGACTTCCAGCTGCATACTCACGTGAATGATGG
CACTGAGTTTGGAGGCTCAATCTACCAGAAAGTTAACGAGAGGATTGAAACGTCAATAAACCTGGCATGG
ACAGCTGGCAGCAACAACACTCGTTTTGGCATCGCTGCTAAATATAAGCTGGATTGTAGAACTTCTCTAT
CTGCCAAAGTAAACAATGCCAGTTTAATTGGACTGGGTTATACGCAGACCCTCCGACCAGGAGTCAAACT
GACCCTGTCAGCTTTAATAGATGGAAAGAACTTCAATGCAGGAGGCCACAAGGTTGGATTGGGATTTGAA
CTGGAGGCTTAG

Translation (283 aa):
MCNTPTYCDLGKAAKDVFNKGYGFGMVKIDLKTKSCSGVEFSTSGHAYTDTGKASGNLETKYKVCNYGLT
FTQKWNTDNTLGTEISWENKLAEGLKLTLDTIFVPNTGKKSGKLKASYRRDCFSLGSNVDIDFSGPTIYG
WAVLAFEGWLAGYQMSFDTAKSKLSQNNFALGYKAADFQLHTHVNDGTEFGGSIYQKVNERIETSINLAW
TAGSNNTRFGIAAKYKLDCRTSLSAKVNNASLIGLGYTQTLRPGVKLTLSALIDGKNFNAGGHKVGLGFE
LEA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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