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Report for CCDS22107.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22107.1 Public Mus musculus 8 Grtp1 23 108 98 CCDS HistoryNCBI Gene:66790Re-query CCDS DB by CCDS ID:22107.1Re-query CCDS DB by GeneID:66790See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22107.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000210317.1 ENSMUSP00000148042.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000210317.1Link to Ensembl Protein Viewer:ENSMUSP00000148042.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000210317Re-query CCDS DB by Protein ID:ENSMUSP00000148042
Original member Current member NCBI NM_025768.2 NP_080044.2 Accepted alive Link to Nucleotide Sequence:NM_025768.2Link to Protein Sequence:NP_080044.2Re-query CCDS DB by Nucleotide ID:NM_025768Re-query CCDS DB by Protein ID:NP_080044Link to BLAST:NP_080044.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080044.2 342 Q9D3N8-2 342 100% 0 0

Chromosomal Locations for CCDS 22107.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 13177053 13177142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13179323 13179508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13179583 13179755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13186883 13186979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13189623 13189747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13192050 13192208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13200049 13200200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13200481 13200527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1029 nt):
ATGGATCCCGCAGAGCGCGCGCAGGCGGCGCGAGCTCGGGTGCCCAGGATCGATCCGTATGGGTTTGAAA
GGCCCGAAGACTTTGACTATGCGGCTTATGAAGAATTCTTTTCCACGTACCTGGTGATACTCACCAAGAG
GGCGATCAAATGGTCCAAACTTCTAAAAGGAAACGGTGGTGTCCGGAAAAGCGTGACAGTGAAGCGCTAT
GTCCGGAAGGGAATCCCGCTGGAGCATCGGGCCCGTGTGTGGATGGCCGTGAGTGGAGCTCAGGCCCGGA
TGGACCAGAGCCCTGGATACTACCATCGACTGCTCGAGGGCGAGAGCAGCTCCAGCCTGGACGAGGCCAT
CAGGACAGACTTGAACCGGACATTCCCTGACAACGTGATGTTTCGGAAGACAGCGGATCCTTGTCTCCAG
AAGACCCTGTACAACGTGCTCCTGGCATATGGGCTACACAACCCAGACGTGGGGTACTGCCAGGGAATGA
ATTTCATAGCTGGGTATCTGATCCTTATCACGAAGAATGAAGAGGAGTCTTTCTGGCTTTTGGACGCTCT
TGTTGGAAGGATACTACCTGATTACTATAGCCCAGCAATGCTGGGGCTGAAGACTGACCAAGAGGTCCTA
GCAGAGCTGGTGAGGATGAAGCTACCAGCAGTGGCAGCCCTGATGGATGGCCATGGTGTGTTGTGGACCC
TGCTGGTGTCCCGCTGGTTCATCTGCCTGTTTGTGGACATCCTACCTGTGGAGACGGTGCTACGGATCTG
GGACTGTCTGTTCAATGAGGGCTCCAAAATCATATTCCGGGTTGCTCTGACCTTAATTAAGCAACACCAG
GAATTTATATTGGAAGCCAGCAGTATTCCAGACATCTGTGACAAGTTTAAGCAGATCACCAAAGGGGACT
TTGTGACAGAGTGTCACGCATTCATGCAGAAAATCTTTTCAGAACCAGGAAGCCTGTCCATGACGACCAT
CACCAGGCTTCGGAAGAGCTGCCGAGCAGCGCTGCAGGCACAGAGCTGA

Translation (342 aa):
MDPAERAQAARARVPRIDPYGFERPEDFDYAAYEEFFSTYLVILTKRAIKWSKLLKGNGGVRKSVTVKRY
VRKGIPLEHRARVWMAVSGAQARMDQSPGYYHRLLEGESSSSLDEAIRTDLNRTFPDNVMFRKTADPCLQ
KTLYNVLLAYGLHNPDVGYCQGMNFIAGYLILITKNEEESFWLLDALVGRILPDYYSPAMLGLKTDQEVL
AELVRMKLPAVAALMDGHGVLWTLLVSRWFICLFVDILPVETVLRIWDCLFNEGSKIIFRVALTLIKQHQ
EFILEASSIPDICDKFKQITKGDFVTECHAFMQKIFSEPGSLSMTTITRLRKSCRAALQAQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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