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Report for CCDS22075.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22075.1 Public Mus musculus 8 Cd209d 23 108 98 CCDS HistoryNCBI Gene:170779Re-query CCDS DB by CCDS ID:22075.1Re-query CCDS DB by GeneID:170779See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 22075.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000011445.7 ENSMUSP00000011445.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000011445.7Link to Ensembl Protein Viewer:ENSMUSP00000011445.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000011445Re-query CCDS DB by Protein ID:ENSMUSP00000011445
Original member Current member NCBI NM_130904.2 NP_570974.1 Accepted alive Link to Nucleotide Sequence:NM_130904.2Link to Protein Sequence:NP_570974.1Re-query CCDS DB by Nucleotide ID:NM_130904Re-query CCDS DB by Protein ID:NP_570974Link to BLAST:NP_570974.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_570974.1 237 Q91ZW8-1 237 100% 0 0

Chromosomal Locations for CCDS 22075.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 3871957 3872110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3873739 3873848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3876254 3876405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3877056 3877130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3877880 3877969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3878251 3878337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3878438 3878483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (714 nt):
ATGAGTGACTCCATGGAATCAAAGACACAGCAAGTGGTCATTCCAGAGGATGAAGAGTGTTTGATGAGTG
GCACCAGGTATTCTGATATCAGCTCCCGATTACAAACAAAATTTGGAATCAAGAGTTTGGCAGAGTATAC
GAAGCAGAGCCGCAACCCCTTGGTCCTGCAGCTGCTTTCCTTCCTGTTCTTGGCTGGGCTTCTGCTGATC
ATTCTGATCCTAGTGTCAAAGGTCCCCAGCTCAGAGGTTCAGAACAAAATCTACCAGGAGCTCATGCAAC
TGAAGGCTGAAGTTCATGATGGCTTGTGCCAACCCTGCGCCAGGGACTGGACATTCTTCAATGGAAGCTG
TTACTTCTTCTCCAAGTCCCAAAGAAATTGGCACAACTCCACCACTGCCTGCCAGGAACTGGGGGCCCAA
CTGGTCATCATAGAGACTGATGAGGAGCAGACTTTCCTGCAGCAGACTTCTAAGGCTAGAGGACCAACCT
GGATGGGTCTCTCAGACATGCATAATGAAGCCACATGGCACTGGGTGGATGGCTCACCTCTGTCACCCAG
CTTTACACGCTATTGGAATAGAGGGGAGCCCAACAATGTCGGTGATGAAGATTGTGCAGAGTTCTCTGGG
GATGGCTGGAATGATCTCAGTTGTGATAAACTACTTTTCTGGATCTGTAAGAAAGTTTCAACCTCATCAT
GCACCACCAAATGA

Translation (237 aa):
MSDSMESKTQQVVIPEDEECLMSGTRYSDISSRLQTKFGIKSLAEYTKQSRNPLVLQLLSFLFLAGLLLI
ILILVSKVPSSEVQNKIYQELMQLKAEVHDGLCQPCARDWTFFNGSCYFFSKSQRNWHNSTTACQELGAQ
LVIIETDEEQTFLQQTSKARGPTWMGLSDMHNEATWHWVDGSPLSPSFTRYWNRGEPNNVGDEDCAEFSG
DGWNDLSCDKLLFWICKKVSTSSCTTK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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