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Report for CCDS21995.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21995.1 Public Mus musculus 7 Ifitm1 23 108 98 CCDS HistoryNCBI Gene:68713Re-query CCDS DB by CCDS ID:21995.1Re-query CCDS DB by GeneID:68713See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21995.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026564.8 ENSMUSP00000026564.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026564.8Link to Ensembl Protein Viewer:ENSMUSP00000026564.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000026564Re-query CCDS DB by Protein ID:ENSMUSP00000026564
Original member Current member EBI ENSMUST00000106040.7 ENSMUSP00000101655.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106040.7Link to Ensembl Protein Viewer:ENSMUSP00000101655.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106040Re-query CCDS DB by Protein ID:ENSMUSP00000101655
Original member Current member EBI ENSMUST00000106042.8 ENSMUSP00000101657.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106042.8Link to Ensembl Protein Viewer:ENSMUSP00000101657.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000106042Re-query CCDS DB by Protein ID:ENSMUSP00000101657
Original member Current member NCBI NM_001112715.1 NP_001106186.1 Accepted alive Link to Nucleotide Sequence:NM_001112715.1Link to Protein Sequence:NP_001106186.1Re-query CCDS DB by Nucleotide ID:NM_001112715Re-query CCDS DB by Protein ID:NP_001106186Link to BLAST:NP_001106186.1
Original member Current member NCBI NM_001360727.1 NP_001347656.1 Accepted alive Link to Nucleotide Sequence:NM_001360727.1Link to Protein Sequence:NP_001347656.1Re-query CCDS DB by Nucleotide ID:NM_001360727Re-query CCDS DB by Protein ID:NP_001347656Link to BLAST:NP_001347656.1
Original member Current member NCBI NM_026820.3 NP_081096.3 Accepted alive Link to Nucleotide Sequence:NM_026820.3Link to Protein Sequence:NP_081096.3Re-query CCDS DB by Nucleotide ID:NM_026820Re-query CCDS DB by Protein ID:NP_081096Link to BLAST:NP_081096.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001106186.1 106 Q9D103 106 100% 0 0
NP_001347656.1 106 Q9D103 106 100% 0 0
NP_081096.3 106 Q9D103 106 100% 0 0

Chromosomal Locations for CCDS 21995.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 140968256 140968438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140969489 140969626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (321 nt):
ATGCCTAAGGAGCAGCAAGAGGTGGTTGTACTGGGGTCACCCCACATCTCAACTTCTGCGACAGCCACCA
CAATCAACATGCCTGAGATCTCCACGCCTGACCATGTGGTCTGGTCCCTGTTCAATACACTCTTCATGAA
CTTCTGCTGCCTGGGCTTCGTAGCCTATGCCTACTCCGTGAAGTCTAGGGACAGGAAGATGGTGGGTGAT
ACGACTGGGGCCCAGGCCTTCGCCTCCACCGCCAAGTGCCTGAACATCAGCTCCCTGTTCTTCACCATCC
TCACGGCCATCGTCGTCATCGTTGTCTGTGCCATTAGATGA

Translation (106 aa):
MPKEQQEVVVLGSPHISTSATATTINMPEISTPDHVVWSLFNTLFMNFCCLGFVAYAYSVKSRDRKMVGD
TTGAQAFASTAKCLNISSLFFTILTAIVVIVVCAIR


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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