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Report for CCDS21983.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21983.1 Public Mus musculus 7 Or13a17 23 108 98 CCDS HistoryNCBI Gene:18344Re-query CCDS DB by CCDS ID:21983.1Re-query CCDS DB by GeneID:18344See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21983.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000084454.3 ENSMUSP00000081492.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000084454.3Link to Ensembl Protein Viewer:ENSMUSP00000081492.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000084454Re-query CCDS DB by Protein ID:ENSMUSP00000081492
Original member Current member EBI ENSMUST00000214637.2 ENSMUSP00000149309.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214637.2Link to Ensembl Protein Viewer:ENSMUSP00000149309.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214637Re-query CCDS DB by Protein ID:ENSMUSP00000149309
Original member Current member NCBI NM_146963.2 NP_667174.1 Accepted alive Link to Nucleotide Sequence:NM_146963.2Link to Protein Sequence:NP_667174.1Re-query CCDS DB by Nucleotide ID:NM_146963Re-query CCDS DB by Protein ID:NP_667174Link to BLAST:NP_667174.1

Chromosomal Locations for CCDS 21983.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 140690907 140691842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (936 nt):
ATGATGTTGAGACTCAACCAGACAGAAGTAACAGAGTTTGTGCTGGAAGGGTTCTCAGAGCACCCTGATC
TAAGATTGTTCCTGATAGGCTGCTTCTTGACCCTCTACATAATGGCTCTGATGGGCAACATTTTGATCAT
CGCTTTGGTTACCTCCAGCACTGGGCTCCACAATCCCATGTACTTTTTCCTGTGCAACCTGGCTACCACG
GATATTTTGTGCACCTCCTCTGTGATTCCTAAGGCCTTGGTTGGCCTAGTGTCTGAGGAAAACACTATCT
CCTTCAAGGAATGTATGTCTCAGCTCTTCTTCCTTGCATGGTCAGCATCTTCTGAGCTGCTGCTGCTCAC
GGTCATGGCCTATGACCGCTATGTGGCCATCTGCTGTCCCCTGCACTACAGCTCTAGGATGAGCCCACAG
ATGTGTGGGGCCCTGGCCATGGGTGTATGGTCCATCAGTGCTGTGAATGCATCTGTGCACACTGGCCTGA
TGACACGGCTGTCATTCTGTGGACCCAAGGTCATCACCCACTTCTTCTGTGAGATTCCCCCACTCCTCCT
GCTCTCCTGTAGTCCTACATATGTAAATACCATTATGACTCTTTTGGGAGATTCCTTTTTTGGAGGCGTC
AATTTTGTGCTTACCTTGCTATCCTATGGCTGCATCATTGCCAGCATCCTGCGCATGCGTTCTGCTGAGG
GCAAGAGGAAGGCCTTTTCTACCTGCTCATCCCACCTCATTGTGGTCTCTGTGTACTACTCATCTGTGTT
CTGTGCCTATGTCAGCCCTGCTTCCAGCTACAGTCCAGAAAGAAGCAAAGTTACCTCAGTGTTATACTCG
ATCGTCAGCCCAACCCTCAACCCCCTCATCTATACACTGAGGAACAAGGATGTCAAGCTTGCCTTGGGCA
GAATATTGGCCTCTTTCTCACATTAA

Translation (311 aa):
MMLRLNQTEVTEFVLEGFSEHPDLRLFLIGCFLTLYIMALMGNILIIALVTSSTGLHNPMYFFLCNLATT
DILCTSSVIPKALVGLVSEENTISFKECMSQLFFLAWSASSELLLLTVMAYDRYVAICCPLHYSSRMSPQ
MCGALAMGVWSISAVNASVHTGLMTRLSFCGPKVITHFFCEIPPLLLLSCSPTYVNTIMTLLGDSFFGGV
NFVLTLLSYGCIIASILRMRSAEGKRKAFSTCSSHLIVVSVYYSSVFCAYVSPASSYSPERSKVTSVLYS
IVSPTLNPLIYTLRNKDVKLALGRILASFSH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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